View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_high_33 (Length: 390)

Name: NF2696_high_33
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_high_33
NF2696_high_33
[»] chr4 (13 HSPs)
chr4 (247-378)||(48175-48306)
chr4 (92-185)||(48369-48462)
chr4 (17-87)||(8740409-8740479)
chr4 (17-87)||(46494499-46494569)
chr4 (17-87)||(39863879-39863949)
chr4 (17-87)||(7173686-7173756)
chr4 (17-87)||(51066454-51066524)
chr4 (17-86)||(32139126-32139195)
chr4 (17-87)||(50905709-50905779)
chr4 (17-68)||(51714066-51714117)
chr4 (28-84)||(2294822-2294878)
chr4 (17-72)||(36192517-36192572)
chr4 (17-68)||(30970485-30970536)
[»] chr8 (14 HSPs)
chr8 (17-87)||(27881089-27881159)
chr8 (17-87)||(28021270-28021340)
chr8 (17-87)||(19723272-19723342)
chr8 (17-87)||(4840101-4840171)
chr8 (17-87)||(11403962-11404032)
chr8 (17-87)||(28739662-28739732)
chr8 (17-87)||(11610241-11610311)
chr8 (17-87)||(32296740-32296810)
chr8 (32-87)||(22711470-22711525)
chr8 (21-87)||(6097525-6097591)
chr8 (17-87)||(24475097-24475167)
chr8 (17-67)||(29767169-29767219)
chr8 (24-87)||(30682800-30682863)
chr8 (28-72)||(41553261-41553305)
[»] chr5 (5 HSPs)
chr5 (17-87)||(17064284-17064354)
chr5 (17-87)||(20983104-20983174)
chr5 (17-86)||(35237124-35237193)
chr5 (17-62)||(37976532-37976577)
chr5 (40-81)||(41910793-41910834)
[»] chr3 (14 HSPs)
chr3 (17-87)||(7417759-7417829)
chr3 (17-87)||(8400816-8400886)
chr3 (24-90)||(35198723-35198789)
chr3 (17-90)||(48078042-48078115)
chr3 (17-97)||(22855838-22855918)
chr3 (24-83)||(55467964-55468023)
chr3 (17-86)||(52545283-52545352)
chr3 (17-77)||(43334155-43334215)
chr3 (17-80)||(34824524-34824587)
chr3 (17-62)||(50726098-50726143)
chr3 (17-62)||(50786705-50786750)
chr3 (31-90)||(39438934-39438993)
chr3 (17-62)||(50823684-50823729)
chr3 (17-62)||(50852131-50852176)
[»] chr7 (13 HSPs)
chr7 (17-87)||(16059454-16059524)
chr7 (24-90)||(21577206-21577272)
chr7 (17-87)||(35109652-35109722)
chr7 (17-87)||(38265338-38265408)
chr7 (17-81)||(41151139-41151203)
chr7 (17-87)||(18117045-18117115)
chr7 (17-87)||(34721795-34721865)
chr7 (17-87)||(45278413-45278483)
chr7 (24-87)||(11216730-11216793)
chr7 (17-90)||(38405255-38405328)
chr7 (17-87)||(48176361-48176430)
chr7 (17-54)||(12472115-12472152)
chr7 (38-87)||(40038626-40038675)
[»] chr2 (19 HSPs)
chr2 (17-87)||(7860247-7860317)
chr2 (28-87)||(2357187-2357246)
chr2 (17-87)||(6672894-6672964)
chr2 (17-87)||(40156001-40156071)
chr2 (28-90)||(2754163-2754225)
chr2 (17-87)||(5039381-5039451)
chr2 (17-87)||(10745333-10745403)
chr2 (17-87)||(17136348-17136418)
chr2 (17-87)||(44650354-44650424)
chr2 (17-76)||(21637869-21637928)
chr2 (17-87)||(2098941-2099011)
chr2 (17-71)||(25987763-25987817)
chr2 (17-90)||(36380233-36380306)
chr2 (17-87)||(26690115-26690185)
chr2 (17-87)||(30372781-30372851)
chr2 (22-86)||(13047257-13047318)
chr2 (17-55)||(45137071-45137109)
chr2 (21-62)||(36836434-36836475)
chr2 (47-87)||(21487111-21487151)
[»] chr6 (5 HSPs)
chr6 (24-90)||(35163858-35163924)
chr6 (17-87)||(14496313-14496383)
chr6 (17-86)||(2711835-2711904)
chr6 (17-86)||(19686928-19686997)
chr6 (17-87)||(14505624-14505693)
[»] chr1 (11 HSPs)
chr1 (17-87)||(21090076-21090146)
chr1 (17-87)||(30054543-30054613)
chr1 (17-87)||(45323967-45324037)
chr1 (18-87)||(20014419-20014488)
chr1 (25-87)||(15034416-15034478)
chr1 (17-87)||(30370161-30370231)
chr1 (17-86)||(33763355-33763424)
chr1 (17-86)||(35617942-35618011)
chr1 (24-68)||(4573359-4573403)
chr1 (24-87)||(12025142-12025205)
chr1 (17-61)||(30850941-30850985)
[»] scaffold0021 (1 HSPs)
scaffold0021 (17-87)||(107792-107862)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 247 - 378
Target Start/End: Complemental strand, 48306 - 48175
Alignment:
Q  247 cgatttttaaattagggagatcaaagccattgagataagaaagatttccccctatttattgatgaaaaactgatcaaagaactcatgagatactttgtta 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48306 cgatttttaaattagggagatcaaagccattgagataagaaagatttccccctatttattgatgaaaaactgatcaaagaactcatgagatactttgtta 48207  T
Q  347 tatgtcacagctacctcatatgatgcaaccta 378  Q
    ||||||||||||||||||||||||||||||||    
T  48206 tatgtcacagctacctcatatgatgcaaccta 48175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 48462 - 48369
Alignment:
Q  92 tattgaccatatcttttgtaacacaagaatattttagtatagtctaatacgcactaccacgtcaaataaataagtcacattatgaataatgact 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  48462 tattgaccatatcttttgtaacacaagaatattttagtatagtctaataagcattaccacgtcaaataaataagtcacattatgaataatgact 48369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 8740479 - 8740409
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8740479 cactagcggggctcgaacccgggatctctcggattcaagacctgtctttttaccactagaccaagcctttg 8740409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 46494499 - 46494569
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46494499 cactagtggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttg 46494569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 39863879 - 39863949
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39863879 cactagcggggtccgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 39863949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 7173686 - 7173756
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||| || |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7173686 cactagcgggtcttgaacctaggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 7173756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 51066524 - 51066454
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  51066524 cactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttg 51066454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 32139195 - 32139126
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  32139195 cactagcggggttcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 50905779 - 50905709
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| || ||||||    
T  50905779 cactagcggggctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttg 50905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 51714066 - 51714117
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcatttta 68  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51714066 cactagtggggctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 2294822 - 2294878
Alignment:
Q  28 ctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcct 84  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  2294822 ctcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaagcct 2294878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 36192572 - 36192517
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccac 72  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  36192572 cactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac 36192517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 30970485 - 30970536
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcatttta 68  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  30970485 cactagtgaggctcgaacccggattctctcggattcaagacctgtcatttta 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 27881089 - 27881159
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27881089 cactagcggggctcgaacccgggttctctcagattcaagacctgtcattttaccactagaccaagcctttg 27881159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 28021270 - 28021340
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28021270 cactagcggggctcgaacccgggttctctcagattcaagacctgtcattttaccactagaccaagcctttg 28021340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 19723342 - 19723272
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19723342 cactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttg 19723272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 4840171 - 4840101
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||    
T  4840171 cactagcggggctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttg 4840101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 11404032 - 11403962
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  11404032 cactagcgaggctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttg 11403962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 28739662 - 28739732
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||| |||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  28739662 cactagtggggcttgaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttg 28739732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 11610311 - 11610241
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||| |||||||| ||| | |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11610311 cactagcgaggctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttg 11610241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 32296740 - 32296810
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||| ||||| ||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||    
T  32296740 cactagcagggcttgaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttg 32296810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 22711525 - 22711470
Alignment:
Q  32 aacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  22711525 aacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttg 22711470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 6097591 - 6097525
Alignment:
Q  21 agcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||| ||| |||||||| |||||||||||||| ||||||||  ||||||||| ||||    
T  6097591 agcggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttg 6097525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 24475097 - 24475167
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| |||||||  ||  |||| |||||||||||||||||||| |||| |||||||||||||||||    
T  24475097 cactagcggagctcgaattcgaattctatcggattcaagacctgtcatcttactactagaccaagcctttg 24475167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 29767219 - 29767169
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcatttt 67  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  29767219 cactagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 30682863 - 30682800
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||| |||| ||||| | |||||||| ||| |||| |||||||||||||||||||||    
T  30682863 ggggctcgaacacgggctctcttgaattcaagaactgccattgtaccactagaccaagcctttg 30682800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 41553305 - 41553261
Alignment:
Q  28 ctcgaacccgggttctctcggattcaagacctgtcattttaccac 72  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||||    
T  41553305 ctcgaactcgggttctctcgaattcaagacctatcattttaccac 41553261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 17064354 - 17064284
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17064354 cactagcgaggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 17064284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 20983104 - 20983174
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  20983104 cactagcggggctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttg 20983174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 35237124 - 35237193
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    ||||||||||||||||| || | |||||||| ||||||||| | ||||||||||||||||||||||||||    
T  35237124 cactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagccttt 35237193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 37976577 - 37976532
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtc 62  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  37976577 cactagcggggctcgaacccaggttctctcggattcaagacctgtc 37976532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 41910834 - 41910793
Alignment:
Q  40 ttctctcggattcaagacctgtcattttaccactagaccaag 81  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||    
T  41910834 ttctctcagattcaagacctgtctttttaccactagagcaag 41910793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 7417829 - 7417759
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7417829 cactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 7417759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 8400886 - 8400816
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8400886 cactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 8400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 35198789 - 35198723
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35198789 ggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaag 35198723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 48078042 - 48078115
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    |||||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48078042 cactagtgaggctcgaacccgagttctctcgaattcaagacctgtcattttaccactagaccaagcctttgaag 48078115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 22855918 - 22855838
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaaggtattga 97  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||| |||||| || ||||||    
T  22855918 cactagcggggctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagttattga 22855838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 55468023 - 55467964
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcc 83  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  55468023 ggggctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaagcc 55467964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 52545352 - 52545283
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||| ||| ||||||| |||||    
T  52545352 cactagcggggctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaaaccttt 52545283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 43334155 - 43334215
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagac 77  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||    
T  43334155 cactagcggggctcgaactcgggttctctcggattcaaaacttgtcattttacctctagac 43334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 34824587 - 34824524
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaa 80  Q
    ||||| |||| ||||||| | ||||||||||||||||||| || || |||||||||||||||||    
T  34824587 cactaacgggactcgaactcaggttctctcggattcaagatctatctttttaccactagaccaa 34824524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 50726098 - 50726143
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtc 62  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||    
T  50726098 cactaacggggctcgaacccgaattctctcggattcaagacctgtc 50726143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 50786750 - 50786705
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtc 62  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||    
T  50786750 cactaacggggctcgaacccgaattctctcggattcaagacctgtc 50786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 39438934 - 39438993
Alignment:
Q  31 gaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    ||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||||||    
T  39438934 gaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaag 39438993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 50823729 - 50823684
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtc 62  Q
    ||||| |||| ||||||||||| |||||||||||||||||| ||||    
T  50823729 cactaacgggactcgaacccggattctctcggattcaagacttgtc 50823684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 50852131 - 50852176
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtc 62  Q
    ||||| |||| ||||||||||| |||||||||||||||||| ||||    
T  50852131 cactaacgggactcgaacccggattctctcggattcaagacttgtc 50852176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 16059454 - 16059524
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  16059454 cactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttg 16059524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 21577206 - 21577272
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21577206 ggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaag 21577272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 35109722 - 35109652
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35109722 cactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 35109652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 38265338 - 38265408
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38265338 cactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 38265408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 41151203 - 41151139
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaag 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41151203 cactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 18117045 - 18117115
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  18117045 cactagcgtggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttg 18117115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 34721865 - 34721795
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34721865 cactagcggggcttgaatccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 34721795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 45278483 - 45278413
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||    
T  45278483 cactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttg 45278413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 11216793 - 11216730
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  11216793 ggggctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttg 11216730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 38405255 - 38405328
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  38405255 cactagcgaggctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaag 38405328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 48176430 - 48176361
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  48176430 cactagcggggctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttg 48176361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 12472152 - 12472115
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaa 54  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12472152 cactagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 40038675 - 40038626
Alignment:
Q  38 ggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  40038675 ggttctctcagattcaagacctgtctttttaccactagatcaagtctttg 40038626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 7860247 - 7860317
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7860247 cactagcggggctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 7860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 2357187 - 2357246
Alignment:
Q  28 ctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357187 ctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 2357246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 6672894 - 6672964
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  6672894 cactagcggggcttgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttg 6672964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 40156071 - 40156001
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  40156071 cactagcggggctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttg 40156001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 2754163 - 2754225
Alignment:
Q  28 ctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2754163 ctcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaag 2754225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 5039451 - 5039381
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  5039451 cactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttg 5039381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 10745333 - 10745403
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  10745333 cactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttg 10745403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 17136418 - 17136348
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  17136418 cactaacggggctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttg 17136348  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 44650424 - 44650354
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||| ||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44650424 cactaacggagctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 44650354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 21637928 - 21637869
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactaga 76  Q
    |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||    
T  21637928 cactagcggggctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 2098941 - 2099011
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| | ||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  2098941 cactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttg 2099011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 25987763 - 25987817
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttacca 71  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  25987763 cactagcggggctcgaacccgagttctctcggattcaagacctgtctttttacca 25987817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 36380233 - 36380306
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    ||||||||||| || |||||| ||| ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  36380233 cactagcggggttcaaacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaag 36380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 26690185 - 26690115
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||| ||||||||| | |||||||| ||| || ||||||| ||||||||||||||||||||||||    
T  26690185 cactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttg 26690115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 30372781 - 30372851
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| |||||||||| || ||||||| ||||||||||| || ||||||||||||||||| ||||||    
T  30372781 cactagcggagctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttg 30372851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 13047257 - 13047318
Alignment:
Q  22 gcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||||||   |||||||||||||    
T  13047257 gcggggctcgaacccggattctctcgaattcaagacctgtctttttacc---agaccaagccttt 13047318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 45137071 - 45137109
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaag 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45137071 cactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 36836434 - 36836475
Alignment:
Q  21 agcggggctcgaacccgggttctctcggattcaagacctgtc 62  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  36836434 agcgggactcgaactcgggttctctcggattcaagacctgtc 36836475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 21487151 - 21487111
Alignment:
Q  47 ggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||||||||||||||| ||| || ||||||    
T  21487151 ggattcaagacctgtcattttaccacttgactaaacctttg 21487111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 35163858 - 35163924
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttgaag 90  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35163858 ggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaag 35163924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 14496383 - 14496313
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  14496383 cactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttg 14496313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 2711835 - 2711904
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    |||||| |||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2711835 cactagtggggctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagccttt 2711904  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 19686928 - 19686997
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  19686928 cactagaggggctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaaaccttt 19686997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 14505624 - 14505693
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||  |||| |||||||||||||| || |||  ||||||| ||||||||||||||||    
T  14505624 cactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttg 14505693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 21090146 - 21090076
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  21090146 cactagcggggctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttg 21090076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 30054543 - 30054613
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||    
T  30054543 cactagcggggctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttg 30054613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 45324037 - 45323967
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45324037 cactagcggggctggaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttg 45323967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 20014488 - 20014419
Alignment:
Q  18 actagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  20014488 actagcgggactcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttg 20014419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 15034478 - 15034416
Alignment:
Q  25 gggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  15034478 gggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttg 15034416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 30370161 - 30370231
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||| ||||||||||||||| |||||||| |||||| || |||| ||||||||||||||||||||||||    
T  30370161 cactagtggggctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttg 30370231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 33763355 - 33763424
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    |||||||||||||||||||  | |||||||| |||||||||||||| |||||| |||||||||| |||||    
T  33763355 cactagcggggctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaaaccttt 33763424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 35618011 - 35617942
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagccttt 86  Q
    ||||| ||| ||||||| |  |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  35618011 cactaacggagctcgaatctaggttctcttggattcaagacctgtcattttaccactagaccaaaccttt 35617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 4573403 - 4573359
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcatttta 68  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  4573403 ggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 12025205 - 12025142
Alignment:
Q  24 ggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    ||||||||||||| |||||||||| |||||||| ||||  |||||||||||||||||| |||||    
T  12025205 ggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttg 12025142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 30850941 - 30850985
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgt 61  Q
    ||||| ||||||||||||||| ||||||||||||| |||| ||||    
T  30850941 cactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 107792 - 107862
Alignment:
Q  17 cactagcggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttg 87  Q
    |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  107792 cactagcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttg 107862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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