View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_high_34 (Length: 388)
Name: NF2696_high_34
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 101 - 374
Target Start/End: Complemental strand, 40517345 - 40517072
Alignment:
| Q |
101 |
cggataacatgttataccacgcacaaaagaatttcctcaaaacagtgcaggcacacacccacaccgtgggctacatagatccgtccctgagtatgtacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517345 |
cggataacatgttataccacgcacaaaagaattttctcaaaacagtgcaggcacacacccacaccgtgggctacatagatccgtccctgagtatgtacca |
40517246 |
T |
|
| Q |
201 |
cactagggtatacacttatgtgatggtgtgtggaatcaaatatacatctcagccaagagtttgtttcatccaacatcaaaatccactctttggctaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40517245 |
cactagggtatacacttatgtgatggtgtgtggaatcaaatatacatctcagccaagagtttgtttcatccaacgtcaaaatccactctttggctaagaa |
40517146 |
T |
|
| Q |
301 |
atcaaattatttttagagggagtttgattgacgtaagcggggtaattaaacggcattgtatcacatattattat |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517145 |
atcaaattatttttagagggagtttgattgacgtaagcggggtaattaaacggcattgtatcacatattattat |
40517072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 5868968 - 5869049
Alignment:
| Q |
103 |
gataacatgttataccacgcacaaaagaatttcctcaaaaca--gtgcaggcacacacccacaccgtgggctacatagatcc |
182 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5868968 |
gatagcatgttataccactcacaaaaaaatttcctcaaaacatagtgcaggcacacgcccacacagtgggctacatagatcc |
5869049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40517445 - 40517407
Alignment:
| Q |
1 |
aattttgaatagtggaggaacaatgtatatacacacacc |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517445 |
aattttgaatagtggaggaacaatgtatatacacacacc |
40517407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 37168458 - 37168507
Alignment:
| Q |
139 |
aaaacagtgcaggcacacacccacaccgtgggctacatagatccgtccct |
188 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37168458 |
aaaatagtgtaggcacacacccacacagtgggctacatagatccgtccct |
37168507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 31842207 - 31842282
Alignment:
| Q |
108 |
catgttataccacgcacaaaagaatttcc-tcaaaaca--gtgcaggcacacacccacaccgtgggctacatagat |
180 |
Q |
| |
|
||||||||||||| ||||||| || |||| |||||||| |||||||||| ||| ||||| |||| |||||||||| |
|
|
| T |
31842207 |
catgttataccactcacaaaaaaaattccctcaaaacatagtgcaggcacgcacgcacacagtggcctacatagat |
31842282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University