View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_4 (Length: 652)
Name: NF2696_high_4
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 28 - 633
Target Start/End: Complemental strand, 30355251 - 30354648
Alignment:
| Q |
28 |
gcatatgaaaaccataataggcataaccttctgcaccacacaacaactcccgagaacnnnnnnnnncaaggaggaaacaaagcagactccagaaaacatc |
127 |
Q |
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| T |
30355251 |
gcatatgaaaaccataataggcataaccttctgcacaccacaacaactcccgagaacaaaaaaaa-caaggaggaaacaaagcagaccacagaaaacatc |
30355153 |
T |
|
| Q |
128 |
ccatgaccaatagctaacccaaacttatagatctaaaactcaacatcagaagctaatcacacaacattaaaaaaccacaacaagaactttaccagcaagc |
227 |
Q |
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| T |
30355152 |
ccatgaccaatagttaacccaaacttgtagatctaaaactcaacatcataagctaatcacacaacattaaaaaaccacaacatgaactttaccagcaagc |
30355053 |
T |
|
| Q |
228 |
ttgtgacaaaacttctagttcctcctcttgaaaacaatgacctccaaacttcatctctgcatacatccgcaaggatcccataaccgttcataaaacaaat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
30355052 |
ttgtgacaaaacttctagttcctcctcttgaaaacaatgacctccaagcttcatctctacatacatccgcaaggatcccatgaccgttcataaaacaaac |
30354953 |
T |
|
| Q |
328 |
aatggagcctatccaaccgattcaaaccccacctccacgacacnnnnnnnnaatcgcatccactatatccaaaggttttttgatcctatttgaaaataaa |
427 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30354952 |
aatggagcctatccaaccgattcaaaccccacctccatgaca-ttttttttaatcgcatccactatatccaaaggttctttgatcctatttgaaaataaa |
30354854 |
T |
|
| Q |
428 |
ttatccctcatttcttccgaaataagacataccccaatgaaccagacaaaccaaaatcccttcctttgtttcttagttctcataaccccattcaaacatt |
527 |
Q |
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| T |
30354853 |
ttatccctcatttcttccgaaataagacataccccaatgaaccagacaaacgaaaatcccttcctttgtttcttagttctcataaccccattcaaacatt |
30354754 |
T |
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| Q |
528 |
gtgaacatgttatgaggatttatcagaacatgcatgtttcttagttcttagtatgttggttaagtcctaagaaatattcgtgagtgtaagtcttgaccct |
627 |
Q |
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| T |
30354753 |
gtgaacatgttatgaggatttatcagaacatgcatgtttcttagttcttagtatgttggttaagtccaaagaaatatgcgtgagtgtaagtcttgaccct |
30354654 |
T |
|
| Q |
628 |
tgcaac |
633 |
Q |
| |
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|||||| |
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| T |
30354653 |
tgcaac |
30354648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 627
Target Start/End: Complemental strand, 30357268 - 30357093
Alignment:
| Q |
446 |
gaaataagacataccccaatgaaccagacaaaccaaaatcccttcctttgtttcttagttctcataaccccattcaaacattgtgaacatgttatgagga |
545 |
Q |
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|||||||| |||| | ||| ||||| ||||| ||||||||||| || |||||||||||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
30357268 |
gaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagttcccgcaaccccattcaaacattgtaaacatgttatgagga |
30357169 |
T |
|
| Q |
546 |
tttatcagaacatgcatgtttcttagttcttagtatgttggttaagtcctaagaaatattcgtgagtgtaagtcttgaccct |
627 |
Q |
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||||| |||| || || |||| ||||||||||| ||| || || ||||||| ||| ||||||||||||||||||||| |
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| T |
30357168 |
attatc--aaca--cacattgcttatttcttagtatgatggctaggttctaagaa--atttgtgagtgtaagtcttgaccct |
30357093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 30371110 - 30371024
Alignment:
| Q |
233 |
acaaaacttctagttcctcctcttgaaaacaatgacctccaaacttcatctctgcatacatccgcaaggatcccataaccgttcata |
319 |
Q |
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||||||||||| |||| ||||||||||||| |||||||||| |||||||| | ||||||| ||||| |||| ||| |||||||||| |
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| T |
30371110 |
acaaaacttcttattccacctcttgaaaacattgacctccaagcttcatctatccatacattcgcaaagatcacatgaccgttcata |
30371024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 540
Target Start/End: Complemental strand, 30370869 - 30370804
Alignment:
| Q |
475 |
aaaccaaaatcccttcctttgtttcttagttctcataaccccattcaaacattgtgaacatgttat |
540 |
Q |
| |
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| T |
30370869 |
aaaccaaaatcactttctctgtttcttagttctcgaaaccccattaaaacattgtgaacatgttat |
30370804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 30375479 - 30375411
Alignment:
| Q |
251 |
cctcttgaaaacaatgacctccaaacttcatctctgcatacatccgcaaggatcccataaccgttcata |
319 |
Q |
| |
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| T |
30375479 |
cctcttgaaaacaatgacctccaagcctcatctctccatacattcgcaaagatcacatgaccgttcata |
30375411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 30357496 - 30357397
Alignment:
| Q |
195 |
taaaaaaccacaacaagaactttaccagcaagcttgtgacaaaacttctagttcctcctcttgaaaacaatgacctccaaacttcatctctgcatacatc |
294 |
Q |
| |
|
|||||||||||||||||| ||||| || | ||||| | |||||| | ||||| |||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
30357496 |
taaaaaaccacaacaagacctttatcaaaatgcttgcaataaaactctttgttccaactcttgaaaacaatgaactccaaacttcatctctccatacatc |
30357397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 30352280 - 30352226
Alignment:
| Q |
314 |
ttcataaaacaaataatggagcctatccaaccgattcaaaccccacctccacgac |
368 |
Q |
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||||||||||||| ||||| || ||| ||||||| ||||||||||||| |||||| |
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| T |
30352280 |
ttcataaaacaaaaaatggggcatattcaaccgactcaaaccccaccttcacgac |
30352226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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