View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_42 (Length: 344)
Name: NF2696_high_42
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37027442 - 37027773
Alignment:
| Q |
1 |
tttgcctcttgatgctagtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatactaatctatctatgtaactt |
100 |
Q |
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| T |
37027442 |
tttgcctcttgatgctagtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatactaatctatctatgtaactt |
37027541 |
T |
|
| Q |
101 |
tagttt-----gtgtaataatttataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtagtagaagctactccatcaaa |
195 |
Q |
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||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027542 |
cagtttaatttgtgtagtaattaataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtagtagaagctactccatcaaa |
37027641 |
T |
|
| Q |
196 |
tcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttccacctttcaattcacttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027642 |
tcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttccacctttcaattcacttg |
37027741 |
T |
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| Q |
296 |
ctccacaacctacctctctaccaccttattca |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
37027742 |
ctccacaacctacctctctaccaccttattca |
37027773 |
T |
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