View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_50 (Length: 308)
Name: NF2696_high_50
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 26102466 - 26102245
Alignment:
| Q |
16 |
aatatattactaatataataaaatggaagtcattcattttatcaaaaatgtcatcggtttgacttttaatctcactaatttgatag-tttcatgtcaatt |
114 |
Q |
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| T |
26102466 |
aatatattactaatataataaaatggaagtcattcattttatcaaaaatgccatcggtttgacttttaatctcactaatttgatgggtttcatgtcaatt |
26102367 |
T |
|
| Q |
115 |
tcttattttattttagtataataagatggaagtccttcattttgtctaaaatgtcctcatggttagtctcttagtatcgtttatttgattggattcttgg |
214 |
Q |
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| T |
26102366 |
tcttattttattttagtataataagatggaagtccttcattttgtctaaaatgtcctcatggttagtctcttagtatcgtttatttgattggattcttgg |
26102267 |
T |
|
| Q |
215 |
ttgatttgttactttaattaat |
236 |
Q |
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|||||||||||||||| ||||| |
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| T |
26102266 |
ttgatttgttactttatttaat |
26102245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 26100778 - 26100725
Alignment:
| Q |
236 |
ttaacatagtaaaactgaagtccttcattttctctaaaataatgccctcggttg |
289 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26100778 |
ttaacataataaaactgaagtccttcattttctctaaaataatgccctcggttg |
26100725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 30929491 - 30929527
Alignment:
| Q |
60 |
aaaatgtcatcggtttgacttttaatctcactaattt |
96 |
Q |
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||||||||||||||| |||||||||||||| |||||| |
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| T |
30929491 |
aaaatgtcatcggttagacttttaatctcattaattt |
30929527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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