View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_high_53 (Length: 302)
Name: NF2696_high_53
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_53 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 13239049 - 13239328
Alignment:
| Q |
11 |
cataggaaacttataataaaca-tattaaaataaaattttagaaagctgttacgacacattggtgtttgatattataaaaggatatgtacctataaaatt |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13239049 |
cataggaaacttataataaacaatattaaaataaaattttagaaagctgttacgacacattggtgtttgatattataaaaggatatgtacctataaaatt |
13239148 |
T |
|
| Q |
110 |
cacaaatgcacttaaaaaagaatgataacttagaaacataacttgcggttgagaaggttctttaaaacattgtgttgtttaagttatcaatgaaaagtg- |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13239149 |
cacaaatgcacttaaaaaagaatgataacttagaaacataacttgcggttgagaaggttctttaaaacattgtgttgtttaagttatcaatgaaaagtgg |
13239248 |
T |
|
| Q |
209 |
--gtattctttataatcaataaataaataataattcaattttttggtataaaaattcttgaaaggaatgattgttggtag |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13239249 |
tagtattctttataatcaataaataaataataattcaattttttggtataaaaattcttgaaaggaatgattgttggtag |
13239328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University