View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_54 (Length: 299)
Name: NF2696_high_54
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_54 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 31 - 299
Target Start/End: Complemental strand, 2839496 - 2839228
Alignment:
| Q |
31 |
tcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgctaaactaatatgctaccaa |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839496 |
tcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgctaaactaatatgctaccaa |
2839397 |
T |
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| Q |
131 |
aaccaataataatgatgcagtagtgcttaattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaagaagctgctgaggcgtataaac |
230 |
Q |
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| T |
2839396 |
aaccaataataatgatgcagtagtgcttaattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaagaagctgctgaggcgtataaac |
2839297 |
T |
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| Q |
231 |
aaatacatcagctttgtggtgaagatgatatcaactaaggttagtcttttaaattttattgatctggat |
299 |
Q |
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| T |
2839296 |
aaatacatcagctttgtggtgaagatgatatcaactaaggttagtcttttaaattttattgatctggat |
2839228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 18297116 - 18297270
Alignment:
| Q |
31 |
tcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgctaaactaatatgctaccaa |
130 |
Q |
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|||||||||||||| ||||||||||| |||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18297116 |
tcaatttccaaaaatgaacacacaaatccagtcaatacatacaatttacgtaaaatatgaaagctatcaatataaatgcgctaaactaatatgctaccaa |
18297215 |
T |
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| Q |
131 |
aacca------ataataatgatgcagtagtgcttaattagcaaattggaattgtt |
179 |
Q |
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| T |
18297216 |
aacaaataattataataatgatgcaggagtgcttaattagcaaattggaattgtt |
18297270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 11689539 - 11689621
Alignment:
| Q |
159 |
aattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaagaagctgctgaggcgtataaacaaatacatcagctt |
244 |
Q |
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| T |
11689539 |
aattaccaaattggatttgatgtaaatgcgctaactgccaaaattat---gaagttgttgaggcatatgaacaaatacatcagctt |
11689621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 11689641 - 11689675
Alignment:
| Q |
265 |
ctaaggttagtcttttaaattttattgatctggat |
299 |
Q |
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| T |
11689641 |
ctaaggttagtcttttaaattttcttgatctggat |
11689675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 30688225 - 30688287
Alignment:
| Q |
197 |
caaaattatgaagaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatgat |
259 |
Q |
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| T |
30688225 |
caaaattatcaaaaagctgctgaggcatatgaacaaatacatcaactttgtcgtgaagatgat |
30688287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 28477979 - 28477919
Alignment:
| Q |
197 |
caaaattatgaagaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatg |
257 |
Q |
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| T |
28477979 |
caaaattatcaaaaagctgctgaggcatatgaacaagtatatcaactttgtcgtgaagatg |
28477919 |
T |
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