View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_56 (Length: 291)
Name: NF2696_high_56
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_56 |
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| [»] scaffold2055 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 30227668 - 30227397
Alignment:
| Q |
12 |
atgaagttaagggggtctgaggtgtgtgacacgttaatattt-aaccactcatctaaaactttattttcattcataaattaataattttgaaagctaaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227668 |
atgaagttaagggggtctgaggtgtgtgacacgttaatattttaaccactcatctaaaactttattttcattcataaattaataattttgaaagctaaga |
30227569 |
T |
|
| Q |
111 |
catagtggtttctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30227568 |
catagtggtttctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaactcaagtgt |
30227469 |
T |
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| Q |
211 |
tcttatgtcaaacattgtagggccagtagagaagatgactttggcaaatcatccagtaaatgggttgtgttt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227468 |
tcttatgtcaaacattgtagggccagtagagaagatgactttggcaaatcatccagtaaatgggttgtgttt |
30227397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 30047175 - 30047018
Alignment:
| Q |
121 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||| ||||| |
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| T |
30047175 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctacaacacaattgggaactcaagtgttctaatgtct |
30047076 |
T |
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| Q |
221 |
aacattgtagggccagtagagaagatgactttggcaaatcatccagtaaatgggttgt |
278 |
Q |
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| T |
30047075 |
aacctcgtaggaccggtagagaagatgactttggcaaatcatccagtatatggattgt |
30047018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 30061516 - 30061359
Alignment:
| Q |
121 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||| ||||| |
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| T |
30061516 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctacaacacaattgggaactcaagtgttctaatgtct |
30061417 |
T |
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| Q |
221 |
aacattgtagggccagtagagaagatgactttggcaaatcatccagtaaatgggttgt |
278 |
Q |
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| T |
30061416 |
aacctcgtaggaccggtagagaagatgactttggcaaatcatccagtatatggattgt |
30061359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 30030868 - 30030716
Alignment:
| Q |
121 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| ||||||||| ||||||| |
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| T |
30030868 |
tctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctacaacacaattaggaactcaagtgtttttatgtct |
30030769 |
T |
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| Q |
221 |
aacattgtagggccagtagagaagatgactttggcaaatcatccagtaaatgg |
273 |
Q |
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| T |
30030768 |
aacctcgtaggaccgatagaaaaaatggctttggcaaaccatccagtaaatgg |
30030716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 30222016 - 30222136
Alignment:
| Q |
153 |
ggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtcaaacattgtagggccagtagagaagatgacttt |
252 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||| || |||||||||||| |||| || ||| | ||||| ||||||||||| ||| |||| |
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| T |
30222016 |
ggttggtgtttcagtctgtagctaaaataatctataacacaatgggaaattcaagtgttgttatctctaacttggtaggaccagtagagaaaatggcttt |
30222115 |
T |
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| Q |
253 |
ggcaaatcatccagtaaatgg |
273 |
Q |
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| T |
30222116 |
ggcaaatcatccaataaatgg |
30222136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 30047275 - 30047238
Alignment:
| Q |
73 |
tattttcattcataaattaataattttgaaagctaaga |
110 |
Q |
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| T |
30047275 |
tattttcattcataaattaataattttgaaagcaaaga |
30047238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 30061616 - 30061579
Alignment:
| Q |
73 |
tattttcattcataaattaataattttgaaagctaaga |
110 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
30061616 |
tattttcattcataaattaataattttgaaagcaaaga |
30061579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 677 - 522
Alignment:
| Q |
123 |
tttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtcaaa |
222 |
Q |
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||||||||||||||||||||| || ||| ||||||||||||||| ||||||||| ||||||| ||||| | |||||| ||||||||||||||||| || |
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| T |
677 |
tttgatttattaatgttctctgattaatttggtttgtgtttcaggcagtagctaaagtaatctacaacactattgggaactcaagtgttcttatgtctaa |
578 |
T |
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| Q |
223 |
cattgtagggccagtagagaagatgactttggcaaatcatccagtaaatgggttgt |
278 |
Q |
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| T |
577 |
cctcgtaggaccagtagaaaaaatggctttggcaaatcatccagtaaatggattgt |
522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 1008 - 969
Alignment:
| Q |
71 |
tttattttcattcataaattaataattttgaaagctaaga |
110 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||| |
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| T |
1008 |
tttatttttattcataaactaataattttgaaagctaaga |
969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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