View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_high_60 (Length: 283)

Name: NF2696_high_60
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_high_60
NF2696_high_60
[»] chr2 (2 HSPs)
chr2 (9-198)||(39650074-39650263)
chr2 (60-126)||(44370764-44370830)
[»] chr3 (6 HSPs)
chr3 (9-151)||(46392882-46393023)
chr3 (9-151)||(46400630-46400771)
chr3 (60-149)||(15609991-15610080)
chr3 (60-149)||(15578947-15579036)
chr3 (60-126)||(15909598-15909664)
chr3 (60-126)||(15923767-15923833)
[»] chr6 (2 HSPs)
chr6 (13-145)||(22632150-22632281)
chr6 (60-126)||(22060208-22060274)
[»] scaffold0182 (1 HSPs)
scaffold0182 (60-141)||(5733-5814)
[»] chr5 (4 HSPs)
chr5 (13-109)||(5435249-5435345)
chr5 (13-109)||(5449069-5449165)
chr5 (53-146)||(7254569-7254661)
chr5 (53-146)||(7262011-7262103)
[»] chr8 (4 HSPs)
chr8 (60-126)||(15449794-15449860)
chr8 (212-258)||(15449712-15449758)
chr8 (79-147)||(39631033-39631100)
chr8 (79-147)||(39640581-39640648)
[»] chr7 (1 HSPs)
chr7 (79-145)||(5651054-5651120)
[»] scaffold0076 (2 HSPs)
scaffold0076 (197-246)||(60897-60946)
scaffold0076 (60-144)||(60810-60896)
[»] chr4 (2 HSPs)
chr4 (214-258)||(16728294-16728338)
chr4 (214-258)||(16720271-16720315)
[»] scaffold0815 (1 HSPs)
scaffold0815 (247-279)||(4535-4567)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 39650074 - 39650263
Alignment:
Q  9 gaagaaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39650074 gaagcaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgcggatttttaacaaaccctagcctc 39650173  T
Q  109 agcgcagcactataaatatagagcctgcacaacacaaaaaagaggacagaaggagaggaagcacattgcatcgtacagcagaacacggga 198  Q
    ||| ||||||||||||||||||||||||||||||||| ||| |  |||||||| |||||||||||   ||||| | | ||||||||||||    
T  39650174 agcccagcactataaatatagagcctgcacaacacaagaaaaacaacagaaggggaggaagcacacgacatcgcataacagaacacggga 39650263  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 44370764 - 44370830
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaata 126  Q
    |||||||| ||||||||| |||||| || ||||||||||||||||||||||| ||| ||||||||||    
T  44370764 tccatcccgatcacctaatttctgcggaattttaacaaaccctagcctcagcccagtactataaata 44370830  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 46393023 - 46392882
Alignment:
Q  9 gaagaaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||    
T  46393023 gaagcaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaatttctgcggattttaaacaaaccctaacctc 46392924  T
Q  109 agcgcagcactataaatatagagcctgcacaacacaaaaaaga 151  Q
    ||| |||||||||||| | ||| |||||||||||||| |||||    
T  46392923 agcccagcactataaaaagaga-cctgcacaacacaagaaaga 46392882  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 46400771 - 46400630
Alignment:
Q  9 gaagaaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||    
T  46400771 gaagcaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaatttctgcggattttaaacaaaccctaacctc 46400672  T
Q  109 agcgcagcactataaatatagagcctgcacaacacaaaaaaga 151  Q
    ||| |||||||||||| | ||| |||||||||||||| |||||    
T  46400671 agcccagcactataaaaagaga-cctgcacaacacaagaaaga 46400630  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 15610080 - 15609991
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaaaaaa 149  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||| ||| |||||| | |||||||||    
T  15610080 tccatcccaatcacctaatttctgcggattttaaacaaaccctagcctcagcccagcactataaatacagaacctgcagagcacaaaaaa 15609991  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 15579036 - 15578947
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaaaaaa 149  Q
    |||||||| ||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||| ||| |||||| | |||||||||    
T  15579036 tccatcccgatcacctaatttctgcggattttaaacaaaccctagcctcagcccagcactataaatacagaacctgcagagcacaaaaaa 15578947  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 15909598 - 15909664
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaata 126  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||| ||||||||    
T  15909598 tccatcccaatcacctaatttctgcggattttaaacaaaccctagcctcagcccagcaatataaata 15909664  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 15923767 - 15923833
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaata 126  Q
    |||||||||||||||||| |||||  |||||| ||||||||||||||||||| ||||||||||||||    
T  15923767 tccatcccaatcacctaatttctgtggattttaaacaaaccctagcctcagcccagcactataaata 15923833  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 22632150 - 22632281
Alignment:
Q  13 aaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcg 112  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |     
T  22632150 aaaacccaggaacacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaatttctgcggattttaaacaaaccctagcctcaacc 22632249  T
Q  113 cagcactataaatatagagcctgcacaacacaa 145  Q
    |||||||||||||| ||  ||||||||||||||    
T  22632250 cagcactataaatagag-ccctgcacaacacaa 22632281  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 22060208 - 22060274
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaata 126  Q
    |||||||| ||||||||| |||||| || ||||||||||||||||||||||| ||| ||||||||||    
T  22060208 tccatcccgatcacctaatttctgcggaattttaacaaaccctagcctcagcccagtactataaata 22060274  T

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Target: scaffold0182 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 5733 - 5814
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaac 141  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5733 tccatcccaatcacctaaattctgcggatttttaacaaaccctagcctcagcccagcactataaatatagagcctgcacaac 5814  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 5435345 - 5435249
Alignment:
Q  13 aaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctca 109  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||    
T  5435345 aaaacccaggaacacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaatttctgcggattttaaacaaaccctagcctca 5435249  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 5449165 - 5449069
Alignment:
Q  13 aaaatccagtaaaacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctca 109  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||    
T  5449165 aaaacccaggaacacaaacgcgtctccatctttcatccaaatccgattccatcccaatcacctaatttctgcggattttaaacaaaccctagcctca 5449069  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 7254661 - 7254569
Alignment:
Q  53 atccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaaa 146  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |    | ||||||||| ||| |||||||||||||||    
T  7254661 atccgattccatcccaatcacctaatttctgcggattttaaacaaaccctagcctcaacctcactctataaatagaga-cctgcacaacacaaa 7254569  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 7262103 - 7262011
Alignment:
Q  53 atccgattccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaaa 146  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |    | ||||||||| ||| |||||||||||||||    
T  7262103 atccgattccatcccaatcacctaatttctgcggattttaaacaaaccctagcctcaacctcactctataaatagaga-cctgcacaacacaaa 7262011  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 15449860 - 15449794
Alignment:
Q  60 tccatcccaatcacctaaattctgctgatttttaacaaaccctagcctcagcgcagcactataaata 126  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  15449860 tccatcccaatcacctaatttctgcggattttaaacaaaccctagcctcagcccagcactataaata 15449794  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 15449758 - 15449712
Alignment:
Q  212 gcacacgagaaaacggagagaaaaggagccggagacgcacaagaagc 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  15449758 gcacacgagaaaacggagagaaaaggagccggagacgaacaagaagc 15449712  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 39631100 - 39631033
Alignment:
Q  79 ttctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaaaa 147  Q
    ||||||| ||| | ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  39631100 ttctgctcattctcaacaaaccctagcctcagcccagcactataaatagaga-cctgcacaacacaaaa 39631033  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 39640648 - 39640581
Alignment:
Q  79 ttctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaaaa 147  Q
    ||||||| ||| | ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  39640648 ttctgctcattctcaacaaaccctagcctcagcccagcactataaatagaga-cctgcacaacacaaaa 39640581  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 5651120 - 5651054
Alignment:
Q  79 ttctgctgatttttaacaaaccctagcctcagcgcagcactataaatatagagcctgcacaacacaa 145  Q
    ||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5651120 ttctgctcattctcaacaaaccctagcctcagcccagcactataaatatagagcctgcacaacacaa 5651054  T

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Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 60897 - 60946
Alignment:
Q  197 gaaagacacagcagagcacacgagaaaacggagagaaaaggagccggaga 246  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  60897 gaaagagacagcggagcacacgaggaaacggagagaaaaggagccggaga 60946  T

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Target: scaffold0076; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 60810 - 60896
Alignment:
Q  60 tccatcccaatcacctaaattctgctga-tttttaacaaaccct--agcctcagcgcagcactataaatatagagcctgcacaacaca 144  Q
    |||||||||||||||||| |||||  || |||||||||||||||  || |||| | |||||||||||||| | | |||||||||||||    
T  60810 tccatcccaatcacctaatttctgtggactttttaacaaaccctaaagtctcaacccagcactataaata-acaacctgcacaacaca 60896  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 16728338 - 16728294
Alignment:
Q  214 acacgagaaaacggagagaaaaggagccggagacgcacaagaagc 258  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  16728338 acacgaggaaacggagagaaaaggagccggagatgcacaagaagc 16728294  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 16720315 - 16720271
Alignment:
Q  214 acacgagaaaacggagagaaaaggagccggagacgcacaagaagc 258  Q
    ||||||| |||| ||||||||||||||| |||| |||||||||||    
T  16720315 acacgaggaaacagagagaaaaggagccagagatgcacaagaagc 16720271  T

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Target: scaffold0815 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 4567 - 4535
Alignment:
Q  247 cgcacaagaagcagaacacagataaagccataa 279  Q
    |||||||||||||||||||||||||||||||||    
T  4567 cgcacaagaagcagaacacagataaagccataa 4535  T

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