View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_high_65 (Length: 260)

Name: NF2696_high_65
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_high_65
NF2696_high_65
[»] chr2 (19 HSPs)
chr2 (13-245)||(8578643-8578875)
chr2 (118-227)||(7612713-7612822)
chr2 (122-224)||(9060325-9060427)
chr2 (101-206)||(9329437-9329542)
chr2 (85-177)||(17565304-17565396)
chr2 (118-177)||(9321858-9321917)
chr2 (122-199)||(9283401-9283478)
chr2 (122-205)||(9275362-9275445)
chr2 (122-205)||(9316864-9316947)
chr2 (122-196)||(10348651-10348725)
chr2 (122-199)||(10372727-10372804)
chr2 (138-211)||(14551152-14551225)
chr2 (122-206)||(9292766-9292850)
chr2 (122-209)||(8572729-8572815)
chr2 (122-209)||(12018141-12018228)
chr2 (143-209)||(9365430-9365496)
chr2 (122-199)||(7114872-7114949)
chr2 (122-199)||(10336656-10336733)
chr2 (138-227)||(12011836-12011925)
[»] chr5 (1 HSPs)
chr5 (89-206)||(36225588-36225705)
[»] scaffold0667 (1 HSPs)
scaffold0667 (122-177)||(5326-5381)
[»] chr8 (1 HSPs)
chr8 (146-205)||(41965973-41966032)
[»] chr3 (2 HSPs)
chr3 (118-177)||(37463389-37463448)
chr3 (106-172)||(39428750-39428816)
[»] chr1 (2 HSPs)
chr1 (130-211)||(29467060-29467141)
chr1 (117-211)||(29452573-29452667)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 8578643 - 8578875
Alignment:
Q  13 aaaatccaaacctcacaatgaattagaaatgaaggnnnnnnnnntagaaaaccctaaaccagtttcgatttcatggctgatgttccaacggaattgttca 112  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8578643 aaaatccaaacctcacaatgaattagaaatgaaggaaaaaaaaatagaaaaccctaaaccagtttcgattccatggctgatgttccaacggaattgttca 8578742  T
Q  113 tcgatatcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaaca 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578743 tcgatatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaaca 8578842  T
Q  213 ttacttcaaaaactccttcagtatcaagatcat 245  Q
    |||| ||||||||||||||||||||||||||||    
T  8578843 ttacctcaaaaactccttcagtatcaagatcat 8578875  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 7612822 - 7612713
Alignment:
Q  118 atcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattact 217  Q
    |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||  |||||| || |||||||||| |||||| || | | ||     
T  7612822 atcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacc 7612723  T
Q  218 tcaaaaactc 227  Q
    ||||||||||    
T  7612722 tcaaaaactc 7612713  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 9060325 - 9060427
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacttcaa 221  Q
    ||||||||||||| || ||||| ||||||||||||||||||| ||| |||||||||  |||||| || ||||| |||| |||||| || | |||| ||||    
T  9060325 tctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaa 9060424  T
Q  222 aaa 224  Q
    |||    
T  9060425 aaa 9060427  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 9329542 - 9329437
Alignment:
Q  101 cggaattgttcatcgatatcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacac 200  Q
    |||||||||| |  || ||||||||||||||||| ||| |||| |||||||||||||| |||| ||| |||||||||  |||| | || ||||||||||     
T  9329542 cggaattgttaacggaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaa 9329443  T
Q  201 cttcac 206  Q
    ||||||    
T  9329442 cttcac 9329437  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 17565304 - 17565396
Alignment:
Q  85 atggctgatgttccaacggaattgttcatcgatatcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcactt 177  Q
    ||||||||| ||||| ||||||| ||||  || |||||||| |||||||| ||||||||||| |||||| |||||||||  || |||||||||    
T  17565304 atggctgatcttccatcggaattattcactgaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcactt 17565396  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 9321917 - 9321858
Alignment:
Q  118 atcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcactt 177  Q
    ||||||||||||||||| ||| |||| ||||||| ||||||||||| |||||||||||||    
T  9321917 atcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcactt 9321858  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 9283401 - 9283478
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 199  Q
    ||||| ||||||| ||  |||| || |||||||||||||||| ||||||||||||||||||| | |||||||| ||||    
T  9283401 tctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcaca 9283478  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 9275445 - 9275362
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttca 205  Q
    ||||||| ||||| |||||||| |||||| ||||||||||||| || |||||||||  ||| || || |||||||||| |||||    
T  9275445 tctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttca 9275362  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 9316947 - 9316864
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttca 205  Q
    |||||| |||||| ||| |||| ||||||||||||||||||| ||| |||||||||  ||| || |||||||| |||| |||||    
T  9316947 tctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttca 9316864  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 10348725 - 10348651
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattccc 196  Q
    ||||||||||||| ||| |||| |||||||||||||||||||  || |||||||||  |||||| || |||||||    
T  10348725 tctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccc 10348651  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 10372804 - 10372727
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 199  Q
    ||||||||||||| ||| |||| ||||||||||||||||||| ||| |||||| ||  ||| || || ||||||||||    
T  10372804 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccaca 10372727  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 14551225 - 14551152
Alignment:
Q  138 acaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaac 211  Q
    ||||||||| |||| ||||||||||| ||| |||||||||| |||| | || |||||||||| ||||| |||||    
T  14551225 acaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaac 14551152  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 9292850 - 9292766
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcac 206  Q
    |||||||| |||| ||| |||| |||||| |||||||||||||||| |||||||||  |||| | || ||||| |||| ||||||    
T  9292850 tctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcac 9292766  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 8572729 - 8572815
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaa 209  Q
    |||||||| |||| ||| |||| ||||||||||||||||||| ||| |||||||||  |||  | || |||||||||| |||||||||    
T  8572729 tctcccgcataccagta-aatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaa 8572815  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 12018141 - 12018228
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaa 209  Q
    ||||||||||||| ||| |||| ||||| |||||||| |||| ||| |||||||||  |||| | || ||||| |||| |||||||||    
T  12018141 tctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaa 12018228  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 9365496 - 9365430
Alignment:
Q  143 cccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaa 209  Q
    |||||||||||||||||||||  || |||||||||  |||| | || ||||| ||||||||||||||    
T  9365496 cccttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaa 9365430  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 7114872 - 7114949
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 199  Q
    |||| ||| |||| |||| ||| ||||| ||||||||||||| ||| |||||||||  |||||| || ||||||||||    
T  7114872 tctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccaca 7114949  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 10336733 - 10336656
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 199  Q
    ||||||| ||||| ||| |||| |||||||||||||||||||  || |||||||||  |||||| || ||||| ||||    
T  10336733 tctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcaca 10336656  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 12011836 - 12011925
Alignment:
Q  138 acaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacttcaaaaactc 227  Q
    |||||| |||||||||||||| |||| ||| |||||||||  |||| | || ||||| |||| ||||||||| | | || ||||||||||    
T  12011836 acaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaactc 12011925  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 36225705 - 36225588
Alignment:
Q  89 ctgatgttccaacggaattgttcatcgatatcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcat 188  Q
    ||||||||||| |||| | ||||| ||| ||||||||||||||||  || |||||||| |||||||||||||||| ||| |||||||||  ||| || ||    
T  36225705 ctgatgttccatcggattggttcaccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaat 36225606  T
Q  189 agattcccacaccttcac 206  Q
     ||||| |||| ||||||    
T  36225605 cgattcgcacaacttcac 36225588  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 5381 - 5326
Alignment:
Q  122 tctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcactt 177  Q
    ||||||||||||| ||| |||| ||||||||||||||||||| ||| |||||||||    
T  5381 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcactt 5326  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 41965973 - 41966032
Alignment:
Q  146 ttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttca 205  Q
    ||||||||||||||||||  || ||||||||||||||||| || |||||||||| |||||    
T  41965973 ttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttca 41966032  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 37463448 - 37463389
Alignment:
Q  118 atcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcactt 177  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||||| ||| |||||||||    
T  37463448 atcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcactt 37463389  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 39428816 - 39428750
Alignment:
Q  106 ttgttcatcgatatcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaat 172  Q
    ||||||| ||| ||||||||||||||||| || |||||||| |||| ||||||||||| ||| ||||    
T  39428816 ttgttcaccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaat 39428750  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 29467060 - 29467141
Alignment:
Q  130 ttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaac 211  Q
    ||||| ||||||||||| ||||||||||| ||||  || |||||||||| |||| | || |||||||||| ||||| |||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaac 29467141  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 29452573 - 29452667
Alignment:
Q  117 tatcctctcccgcttacccgtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaac 211  Q
    ||||||||| |  ||||| ||||||||||| ||||||||||| ||||  || |||||||||| |||| | || ||||| |||| ||||| |||||    
T  29452573 tatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaac 29452667  T

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