View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_high_69 (Length: 255)

Name: NF2696_high_69
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_high_69
NF2696_high_69
[»] chr5 (15 HSPs)
chr5 (11-240)||(41315747-41315976)
chr5 (13-240)||(41321797-41322024)
chr5 (11-240)||(41323816-41324045)
chr5 (25-240)||(41327714-41327929)
chr5 (25-240)||(41331727-41331942)
chr5 (21-240)||(41365907-41366126)
chr5 (11-182)||(31188915-31189086)
chr5 (23-179)||(31185407-31185563)
chr5 (33-235)||(41285820-41286022)
chr5 (49-189)||(31178905-31179045)
chr5 (24-189)||(31224720-31224885)
chr5 (52-188)||(41336708-41336844)
chr5 (33-133)||(41359676-41359776)
chr5 (43-235)||(41369318-41369510)
chr5 (33-98)||(41430822-41430887)
[»] chr4 (1 HSPs)
chr4 (11-209)||(17249603-17249801)
[»] chr3 (2 HSPs)
chr3 (75-117)||(22901796-22901838)
chr3 (75-107)||(22858450-22858482)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 41315976 - 41315747
Alignment:
Q  11 agaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggc 110  Q
    ||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41315976 agaatataacatcagtagcattgtaactccatattgtagacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcataatctctttggc 41315877  T
Q  111 aatttctggtgaactaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggc 210  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41315876 aatttctggtgaactaactattacgtatggcacccctcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggc 41315777  T
Q  211 aatgatctgctgataatctgatgtaagttt 240  Q
    ||||||||||||||||||||||||||||||    
T  41315776 aatgatctgctgataatctgatgtaagttt 41315747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 41322024 - 41321797
Alignment:
Q  13 aatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaa 112  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  41322024 aatataacatcagtagcattgtaactaaatattgtagacaaaagaaggtttggcctatcacaaaagttgagatcatgtgttttcataatctctttggcaa 41321925  T
Q  113 tttctggtgaactaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaa 212  Q
    |||||||||||||||||||||||||||| ||| |||||| ||| |||| ||| |  |||||||||||||||||||||| ||| ||  | |||||||||||    
T  41321924 tttctggtgaactaactattacgtatggtacctctcctagtttaaggtgcattagaggtccatatttatctgccaaaattttgaagagatgatggggcaa 41321825  T
Q  213 tgatctgctgataatctgatgtaagttt 240  Q
    ||||||||||||||||||||||||||||    
T  41321824 tgatctgctgataatctgatgtaagttt 41321797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 41324045 - 41323816
Alignment:
Q  11 agaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggc 110  Q
    ||||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||| |||||||| | || |||||||||||||| |||||||||||    
T  41324045 agaatataacatcagtagcattgtaagttaatattgtggccaaaagaaggtttggcctatcactaaaggtaaggtcatgtgttttcataatctctttggc 41323946  T
Q  111 aatttctggtgaactaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggc 210  Q
    ||||||||||||||||||||||| |||||| ||| |||||| ||| |||| ||| || |||||||||||||| ||||||| ||| || ||||||||||||    
T  41323945 aatttctggtgaactaactattatgtatggtacctctcctagtttaaggtgcattaaaggtccatatttatcagccaaaattttgaagcggtgatggggc 41323846  T
Q  211 aatgatctgctgataatctgatgtaagttt 240  Q
    ||||||||||||||||||||||||||||||    
T  41323845 aatgatctgctgataatctgatgtaagttt 41323816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 41327929 - 41327714
Alignment:
Q  25 gtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaac 124  Q
    ||||||| ||||||| ||||  ||||||||||||||||||||||  | |  ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41327929 gtagcattgtaactatatatattggacaaaagaaggtttggcctgtcgcagaagttgagatcatgtgttttcataatctctttggcaatttctggtgaac 41327830  T
Q  125 taactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgat 224  Q
    |||||||||||||||| ||| |||||| ||| |||| ||| |  |||||||||||||||||||||| ||| ||  | |||||||||||||||||||||||    
T  41327829 taactattacgtatggtacctctcctagtttaaggtgcattagaggtccatatttatctgccaaaattttgaagagatgatggggcaatgatctgctgat 41327730  T
Q  225 aatctgatgtaagttt 240  Q
    ||||||||||||||||    
T  41327729 aatctgatgtaagttt 41327714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 41331942 - 41331727
Alignment:
Q  25 gtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaac 124  Q
    ||||||| ||||||  ||||||| ||||||||||||||||||||| ||| |||  | || |||||||||||||| | |||||| || |||||||||||||    
T  41331942 gtagcattgtaactccatattgttgacaaaagaaggtttggcctatcacaaaatgtaaggtcatgtgttttcataacctcttttgccatttctggtgaac 41331843  T
Q  125 taactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgat 224  Q
    |||||||||| ||||| ||| |||||| ||| |||| |||||| ||||||||||| ||||||||   ||| ||  |||||||||||||||||||||||||    
T  41331842 taactattacatatggtacctctcctagtttaaggtgcatcaaaggtccatatttttctgccaactttttgaagaggtgatggggcaatgatctgctgat 41331743  T
Q  225 aatctgatgtaagttt 240  Q
    ||||||||||||||||    
T  41331742 aatctgatgtaagttt 41331727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 41366126 - 41365907
Alignment:
Q  21 atcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggt 120  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||  ||||||| ||||||||||||||| |||||||||||||||||||||    
T  41366126 atcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagttgatatcatgtgttttcataatctctttggcaatttctggt 41366027  T
Q  121 gaactaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgc 220  Q
    ||||||||||||| ||| || ||| | ||||| || |||| ||| |||||||||||||  ||||||||   ||| |   |||||||||||||||| ||      
T  41366026 gaactaactattatgtaaggtacctcacctaactttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatggggcaatgaactcg 41365927  T
Q  221 tgataatctgatgtaagttt 240  Q
    | ||||||||||||| ||||    
T  41365926 ttataatctgatgtatgttt 41365907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 31188915 - 31189086
Alignment:
Q  11 agaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggc 110  Q
    |||| |||| |||| |||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||| |||||||||||    
T  31188915 agaagataatatcaatagcattgtaactaaatattgtggacaaaagaaggtttggtctatcacaaaagttgaggtcatgtgttttcataatctctttggc 31189014  T
Q  111 aatttctggtgaactaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatc 182  Q
     |||  ||||||||||||||||| |||||  ||| |||||| ||| |||| ||| |||||||||||| ||||    
T  31189015 cattgatggtgaactaactattaggtatgatacctctcctagttttaggtgcattaagggtccatatgtatc 31189086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 31185407 - 31185563
Alignment:
Q  23 cagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtga 122  Q
    ||||||| | |||||||||||||||||||||||||| |||||| ||| ||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||    
T  31185407 cagtagcgttgtaactaaatattgtggacaaaagaaagtttggtctatcacaaaagttgaggtcatgtgttttcataatctctttggccattgatggtga 31185506  T
Q  123 actaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatattt 179  Q
    ||||||||||| |||||  ||| |||||| ||| |||| ||| ||||||||||||||    
T  31185507 actaactattaggtatgatacctctcctagttttaggtgcattaagggtccatattt 31185563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 41286022 - 41285820
Alignment:
Q  33 gtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaactaactatt 132  Q
    |||| ||| |||||||| ||||||||||||||||||| ||| |||  |||  |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  41286022 gtaagtaagtattgtgggcaaaagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactatt 41285923  T
Q  133 acgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgat 232  Q
    | ||| |||||| |||||| ||| | || |||||  ||||||||||| ||| |||||| ||| || |  |||||||||| ||| || || ||||| ||||    
T  41285922 atgtaaggcacctctcctagttttaagtgcatcagaggtccatatttctcttccaaaattttgaagcaatgatggggcagtgagctactaataatatgat 41285823  T
Q  233 gta 235  Q
    |||    
T  41285822 gta 41285820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 31178905 - 31179045
Alignment:
Q  49 gacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaactaactattacgtatggcaccactc 148  Q
    |||||||||||||| || ||| ||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||||||||||| ||||| |||  |||    
T  31178905 gacaaaagaaggttcggtctatcacaaaagttgaggtcatgtgttttcataatctctttggccattgatggtgaactaactattatgtatgacacttctc 31179004  T
Q  149 ctaatttcaggtacatcaagggtccatatttatctgccaaa 189  Q
    ||||||| |||||||| |||||||||||||| || ||||||    
T  31179005 ctaattttaggtacattaagggtccatatttttcagccaaa 31179045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 31224885 - 31224720
Alignment:
Q  24 agtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaa 123  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||  ||| ||||||||| || | ||||||||| ||||||| ||| |||  |||||||    
T  31224885 agtagcattgtaactaaatattgtggacaaaagaaggtttgctctgtcacaaaagttgaggtcgtttgttttcataatctcttgggccattgatggtgaa 31224786  T
Q  124 ctaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaa 189  Q
    |||||||||| |||||  ||| |||||| ||| | || ||| |||||||||||||| || ||||||    
T  31224785 ctaactattaggtatgatacctctcctagttttaagtgcattaagggtccatatttttcagccaaa 31224720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 41336844 - 41336708
Alignment:
Q  52 aaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaactaactattacgtatggcaccactccta 151  Q
    |||||||  ||||||||| ||| |||  |||  |||||||||||||| |||||||| || ||||||||||||||||||| ||| ||||| ||| ||||||    
T  41336844 aaaagaacatttggcctatcacaaaatgtgatgtcatgtgttttcataatctcttttgccatttctggtgaactaactactacatatggtacctctccta 41336745  T
Q  152 atttcaggtacatcaagggtccatatttatctgccaa 188  Q
     ||| |||| |||||| ||||||||||| ||||||||    
T  41336744 gtttaaggtgcatcaaaggtccatatttttctgccaa 41336708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 41359776 - 41359676
Alignment:
Q  33 gtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaactaactatt 132  Q
    |||| ||| |||||||| ||||||||||||||||||  ||| |||| | || |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  41359776 gtaagtaagtattgtggccaaaagaaggtttggcctgtcaccaaaggtaaggtcatgtgttttcataatctctttggcaatttctggtggactaactatt 41359677  T
Q  133 a 133  Q
    |    
T  41359676 a 41359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 41369510 - 41369318
Alignment:
Q  43 attgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggcaatttctggtgaactaactattacgtatggca 142  Q
    |||||||||| |||||||||||| |||  || |||| |||||||||||||||| |  ||||||||||| |||||||||||||||||||||| | |||  |    
T  41369510 attgtggacagaagaaggtttggtctattacaaaaggtgagatcatgtgtttttagaatctctttggccatttctggtgaactaactattatgcatgata 41369411  T
Q  143 ccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgta 235  Q
     | |||||| ||| || | ||| |||||||||||||| | |||||||  ||| || |  |||||||||| ||| || || ||||| |||||||    
T  41369410 tctctcctagttttagatgcattaagggtccatatttctttgccaaatttttgaagcaatgatggggcagtgagctactaataatttgatgta 41369318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 41430887 - 41430822
Alignment:
Q  33 gtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcat 98  Q
    |||| |||||||||| ||||||||||||||||||||| ||| |||||| |  || |||||||||||    
T  41430887 gtaagtaaatattgtagacaaaagaaggtttggcctatcacaaaagtttaagtcttgtgttttcat 41430822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 17249603 - 17249801
Alignment:
Q  11 agaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctaccactaaagttgagatcatgtgttttcatcatctctttggc 110  Q
    |||||| || ||||| ||||| |||| ||||||||||||||||||||||||| |||||| ||| |||| | || |||||||||||||| |||||||||||    
T  17249603 agaatacaatatcagaagcattgtaagtaaatattgtggacaaaagaaggttaggcctatcacaaaaggtaaggtcatgtgttttcataatctctttggc 17249702  T
Q  111 aatttctggtgaactaactattacgtatggcaccactcctaatttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatgggg 209  Q
     |||  ||||||||||||||||| || ||| ||| |||||| ||| ||   ||| |||||||||||||||||||||||||  || || |||||||||||    
T  17249703 cattgttggtgaactaactattaggtgtggtacctctcctagttttagcagcattaagggtccatatttatctgccaaaatcttgaaccggtgatgggg 17249801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 22901838 - 22901796
Alignment:
Q  75 aaagttgagatcatgtgttttcatcatctctttggcaatttct 117  Q
    |||||||||||||||||||||||| |||||||| || ||||||    
T  22901838 aaagttgagatcatgtgttttcattatctcttttgccatttct 22901796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 22858450 - 22858482
Alignment:
Q  75 aaagttgagatcatgtgttttcatcatctcttt 107  Q
    |||||||||||||||||||||||| ||||||||    
T  22858450 aaagttgagatcatgtgttttcattatctcttt 22858482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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