View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_high_71 (Length: 251)

Name: NF2696_high_71
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_high_71
NF2696_high_71
[»] chr2 (22 HSPs)
chr2 (1-236)||(38066788-38067013)
chr2 (103-236)||(5507321-5507455)
chr2 (113-236)||(34517016-34517140)
chr2 (117-236)||(25217905-25218025)
chr2 (163-237)||(44465842-44465916)
chr2 (163-236)||(39447128-39447201)
chr2 (113-236)||(36949060-36949184)
chr2 (163-236)||(17474914-17474987)
chr2 (131-236)||(33452558-33452664)
chr2 (131-236)||(45153906-45154012)
chr2 (166-236)||(41510543-41510613)
chr2 (183-236)||(4268353-4268406)
chr2 (163-236)||(9847540-9847613)
chr2 (15-52)||(38042612-38042649)
chr2 (166-236)||(32187984-32188054)
chr2 (103-236)||(25715268-25715404)
chr2 (192-236)||(36874980-36875024)
chr2 (163-236)||(15995228-15995302)
chr2 (186-236)||(42894366-42894416)
chr2 (192-229)||(2764506-2764543)
chr2 (198-227)||(38308918-38308947)
chr2 (192-236)||(41855014-41855058)
[»] chr4 (28 HSPs)
chr4 (98-236)||(3703370-3703509)
chr4 (104-236)||(38416479-38416612)
chr4 (103-232)||(49396921-49397051)
chr4 (103-236)||(6228931-6229065)
chr4 (126-236)||(23523842-23523953)
chr4 (112-236)||(32441733-32441858)
chr4 (117-236)||(25539068-25539188)
chr4 (131-236)||(25491515-25491621)
chr4 (119-236)||(38536099-38536217)
chr4 (163-236)||(48319185-48319257)
chr4 (103-218)||(6003811-6003927)
chr4 (117-236)||(55052739-55052859)
chr4 (163-233)||(7931632-7931702)
chr4 (166-236)||(46440394-46440464)
chr4 (166-236)||(50392529-50392599)
chr4 (120-236)||(53894111-53894228)
chr4 (120-236)||(29822550-29822666)
chr4 (131-236)||(19835461-19835567)
chr4 (166-236)||(25752564-25752634)
chr4 (167-236)||(17933257-17933326)
chr4 (167-236)||(54631583-54631652)
chr4 (192-236)||(8106395-8106439)
chr4 (151-222)||(49002934-49003006)
chr4 (170-236)||(40703645-40703711)
chr4 (179-236)||(41323218-41323275)
chr4 (187-229)||(5865208-5865250)
chr4 (103-186)||(34972787-34972871)
chr4 (192-236)||(34972867-34972911)
[»] chr5 (32 HSPs)
chr5 (113-236)||(27212585-27212709)
chr5 (103-236)||(33487478-33487611)
chr5 (103-236)||(37095035-37095167)
chr5 (120-236)||(6156615-6156732)
chr5 (120-236)||(15799109-15799226)
chr5 (117-236)||(25746908-25747026)
chr5 (103-236)||(26190418-26190552)
chr5 (166-236)||(38871602-38871672)
chr5 (163-236)||(12465226-12465299)
chr5 (121-236)||(20891497-20891614)
chr5 (131-236)||(38692902-38693009)
chr5 (131-239)||(28083495-28083604)
chr5 (163-236)||(38372237-38372310)
chr5 (132-236)||(39524672-39524777)
chr5 (163-236)||(40620110-40620183)
chr5 (117-236)||(4064840-4064960)
chr5 (164-236)||(34529954-34530029)
chr5 (118-236)||(26319000-26319118)
chr5 (166-237)||(43388188-43388259)
chr5 (198-236)||(31221459-31221497)
chr5 (167-233)||(31929229-31929295)
chr5 (192-229)||(11186303-11186340)
chr5 (167-236)||(36359706-36359775)
chr5 (192-236)||(14111854-14111898)
chr5 (179-227)||(32842101-32842149)
chr5 (163-239)||(37183899-37183975)
chr5 (117-236)||(24203804-24203920)
chr5 (112-186)||(34440620-34440695)
chr5 (187-225)||(14001635-14001673)
chr5 (166-236)||(38640653-38640723)
chr5 (167-236)||(15957681-15957750)
chr5 (187-223)||(8739326-8739362)
[»] chr7 (22 HSPs)
chr7 (103-236)||(47202399-47202533)
chr7 (163-236)||(43737090-43737163)
chr7 (131-236)||(3936041-3936147)
chr7 (131-235)||(37518416-37518521)
chr7 (131-236)||(19225718-19225825)
chr7 (174-236)||(8154876-8154938)
chr7 (166-236)||(28230588-28230658)
chr7 (120-236)||(42925761-42925878)
chr7 (117-236)||(24042308-24042428)
chr7 (163-236)||(36468656-36468729)
chr7 (163-236)||(36629171-36629244)
chr7 (118-213)||(28349227-28349323)
chr7 (163-233)||(9151780-9151850)
chr7 (98-223)||(28346048-28346173)
chr7 (166-236)||(36408340-36408410)
chr7 (187-222)||(43185784-43185819)
chr7 (119-239)||(3304875-3304997)
chr7 (174-236)||(33574154-33574216)
chr7 (112-236)||(31642955-31643080)
chr7 (187-224)||(37218237-37218274)
chr7 (163-236)||(26555161-26555236)
chr7 (183-236)||(7115391-7115444)
[»] chr1 (26 HSPs)
chr1 (103-236)||(23442643-23442777)
chr1 (162-239)||(52744934-52745011)
chr1 (126-236)||(6223857-6223969)
chr1 (163-236)||(44573216-44573289)
chr1 (103-236)||(27794760-27794893)
chr1 (103-236)||(33611530-33611664)
chr1 (166-236)||(40650795-40650865)
chr1 (104-236)||(49786175-49786308)
chr1 (120-236)||(15069962-15070079)
chr1 (166-239)||(45567993-45568066)
chr1 (126-236)||(40908054-40908165)
chr1 (103-236)||(18583664-18583798)
chr1 (131-236)||(32817731-32817837)
chr1 (117-236)||(34162841-34162962)
chr1 (167-236)||(42545937-42546006)
chr1 (163-236)||(43319316-43319389)
chr1 (165-224)||(45046982-45047041)
chr1 (167-236)||(7011178-7011249)
chr1 (189-236)||(49677475-49677522)
chr1 (192-236)||(24472950-24472994)
chr1 (187-225)||(890498-890536)
chr1 (179-225)||(26723614-26723660)
chr1 (103-186)||(24471474-24471558)
chr1 (192-236)||(30829586-30829629)
chr1 (103-186)||(30829625-30829709)
chr1 (192-236)||(32542391-32542435)
[»] chr6 (12 HSPs)
chr6 (117-236)||(5699477-5699597)
chr6 (103-236)||(24604482-24604617)
chr6 (111-236)||(32035026-32035152)
chr6 (163-233)||(1945652-1945722)
chr6 (163-236)||(14587680-14587753)
chr6 (163-236)||(17264376-17264449)
chr6 (113-236)||(33413467-33413590)
chr6 (163-236)||(7412794-7412867)
chr6 (103-236)||(4508422-4508555)
chr6 (163-236)||(3717403-3717476)
chr6 (119-230)||(23406717-23406829)
chr6 (103-236)||(2813344-2813479)
[»] chr3 (29 HSPs)
chr3 (117-236)||(50716171-50716291)
chr3 (117-236)||(50796556-50796676)
chr3 (102-236)||(47301923-47302058)
chr3 (103-236)||(49096347-49096480)
chr3 (163-236)||(33438488-33438561)
chr3 (103-233)||(51258308-51258438)
chr3 (103-236)||(3937293-3937427)
chr3 (103-236)||(48303896-48304030)
chr3 (120-236)||(3902926-3903043)
chr3 (163-236)||(34821516-34821589)
chr3 (164-236)||(45244356-45244428)
chr3 (163-226)||(47123072-47123135)
chr3 (163-226)||(47130438-47130501)
chr3 (131-236)||(47740052-47740158)
chr3 (166-236)||(51540734-51540804)
chr3 (104-226)||(30721939-30722063)
chr3 (163-234)||(38977870-38977941)
chr3 (104-233)||(28872910-28873039)
chr3 (183-236)||(501261-501314)
chr3 (164-236)||(46622904-46622977)
chr3 (126-236)||(2358742-2358854)
chr3 (189-236)||(34821463-34821510)
chr3 (166-236)||(3352186-3352256)
chr3 (178-236)||(35142055-35142113)
chr3 (112-187)||(42936583-42936659)
chr3 (182-233)||(42936685-42936736)
chr3 (163-233)||(39149776-39149845)
chr3 (187-220)||(51492814-51492847)
chr3 (103-151)||(43473155-43473203)
[»] chr8 (20 HSPs)
chr8 (98-236)||(41530569-41530708)
chr8 (163-236)||(27928061-27928134)
chr8 (131-236)||(8885573-8885679)
chr8 (163-236)||(44106189-44106262)
chr8 (103-233)||(21004295-21004426)
chr8 (163-233)||(42281017-42281087)
chr8 (163-236)||(36404274-36404347)
chr8 (163-236)||(3094647-3094720)
chr8 (163-236)||(28916749-28916822)
chr8 (168-236)||(34853301-34853368)
chr8 (117-236)||(37248477-37248597)
chr8 (163-236)||(31520012-31520085)
chr8 (181-227)||(17120009-17120055)
chr8 (163-236)||(16310565-16310638)
chr8 (187-231)||(10840881-10840925)
chr8 (166-236)||(9073473-9073543)
chr8 (187-225)||(40392524-40392562)
chr8 (187-220)||(1076542-1076575)
chr8 (179-236)||(35676658-35676715)
chr8 (187-227)||(33472057-33472097)
[»] scaffold0182 (1 HSPs)
scaffold0182 (167-236)||(23092-23161)
[»] scaffold0137 (1 HSPs)
scaffold0137 (120-236)||(9617-9734)
[»] scaffold0508 (1 HSPs)
scaffold0508 (117-236)||(3515-3637)
[»] scaffold0027 (1 HSPs)
scaffold0027 (167-236)||(142083-142152)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38067013 - 38066788
Alignment:
Q  1 ttcttttctagactatggtttttgtgagttagataattaaatatataaaatagattgagtattattttttggaattctcgcgctccctannnnnnnnctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||        |||    
T  38067013 ttcttttctagactatggtttttgtgagttagataattaaatatataaaatagattgagtattattttttggaattttcgcactctctattttttttctt 38066914  T
Q  101 ctaaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttata 199  Q
     ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||| ||          ||||||||    
T  38066913 -taaaaatgttcttaaagtttccgaatttcataatccgaattcatgttttcttttgttatagtgtgaaaaaatgagttatgg----------attttata 38066825  T
Q  200 atccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||| | |||| |||||    
T  38066824 atccgaaaacttcaaaaaatagggtgtgttatatgat 38066788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 5507321 - 5507455
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  |||||||||| ||  |||||||||||||| |  ||||||| ||| |||||  ||||||||||||||||| |||||||||||||||| ||||    
T  5507321 aaaaatgcccttgaagttttcgggtttcataatccgaactagtgttttcctttgttatatggtgaaaaaatgagttacagattttttcgaattttgtaat 5507420  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    || |||||||||||||||| | |||||||||||||    
T  5507421 ccaaaaacttcaaaaaataagacgcgttacatgat 5507455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 34517016 - 34517140
Alignment:
Q  113 ttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaactt 211  Q
    ||||||||| || |||||||| |||||| || ||||||| ||| |||||| |||||||||||||||||| ||||||||| ||||| |||||  ||||  |    
T  34517016 ttgaagttttcggatttcatattccgaactggtgttttcctttgttatacggtgaaaaaatgagttacgaattttttcggattttgtaatcgaaaaatct 34517115  T
Q  212 caaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||||    
T  34517116 caaaaaatagggcgcgttacatgat 34517140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 25218025 - 25217905
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||| | |||| |||||||| | |||||||||||||  ||| |  |||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||    
T  25218025 agtttctggattttataatccgcaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttcggattttgtaatccggaaacttcaaa 25217926  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||| ||||||||||||    
T  25217925 aaatagggtgcgttacatgat 25217905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 44465916 - 44465842
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgata 237  Q
    |||||||||||||| |||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  44465916 gtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgata 44465842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 39447128 - 39447201
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||    
T  39447128 gtgaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttcaaaaaatagggcgcattacatgat 39447201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 36949184 - 36949060
Alignment:
Q  113 ttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaactt 211  Q
    |||| ||||||  ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||||||||| || ||||| ||||| | ||||||    
T  36949184 ttgaggtttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatctgcaaactt 36949085  T
Q  212 caaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||||    
T  36949084 caaaaaatagggcgcgttacatgat 36949060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 17474987 - 17474914
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||||| |||||| ||||||||||||||||||||||||    
T  17474987 gtgaaaaaatgagtaacggatttttccggattttgtaatccggaaactttaaaaaatagggcgcgttacatgat 17474914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 33452664 - 33452558
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||||| |||||||||||||  ||| |  ||| |||||||||| ||||||||||  | ||||| |||| || ||||||||||||||||||||||||    
T  33452664 ataatccgaaatgatgttttcttttgttaaagggtggaaaaatgagtaacggatttttctggattttgtaattcggaaacttcaaaaaatagggcgcgtt 33452565  T
Q  230 acatgat 236  Q
    |||||||    
T  33452564 acatgat 33452558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 45154012 - 45153906
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||| |||||  ||||||| ||||| | ||||||||||||||||||||||||    
T  45154012 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttctgaattttgtaatctggaaacttcaaaaaatagggcgcgtt 45153913  T
Q  230 acatgat 236  Q
    |||||||    
T  45153912 acatgat 45153906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 41510613 - 41510543
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| |||||||||| |  ||||  ||||||| |||||||||||||||||||||||||||||||    
T  41510613 aaaaaatgagtaacggatttttccagatttcgtaatccggaaacttcaaaaaatagggcgcgttacatgat 41510543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 4268406 - 4268353
Alignment:
Q  183 ttttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  4268406 ttttttcggattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgat 4268353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 9847613 - 9847540
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||||||| ||||||| |  ||||| |||||||||||  ||||||||| ||||||||||||||||    
T  9847613 gtgaaaaaatgagttactgatttttccagattttgtaatccgaaaatctcaaaaaattgggcgcgttacatgat 9847540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 38042649 - 38042612
Alignment:
Q  15 atggtttttgtgagttagataattaaatatataaaata 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38042649 atggtttttgtgagttagataattaaatatataaaata 38042612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 32188054 - 32187984
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| |||| |||||  | ||||| ||||| | |||||||||||||||||||| ||||||||||    
T  32188054 aaaaaatgagtaacgggtttttctggattttgtaatctggaaacttcaaaaaatagggcgagttacatgat 32187984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 25715268 - 25715404
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggatttttt--cgaattttata 199  Q
    |||||||  ||||||||||||| |||| |||||||| | || ||||||| ||| ||| |  |||||||||||||||||  |||||||  || | ||| ||    
T  25715268 aaaaatgcccttgaagtttccggattttataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttacaaattttttttcggactttgta 25715367  T
Q  200 atccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||| ||||  |||||| |||||||||||||| ||||    
T  25715368 atccaaaaatctcaaaagatagggcgcgttacctgat 25715404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 36874980 - 36875024
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||    
T  36874980 attttgtaatccggaaacttcaaaaaataggacgcgttacatgat 36875024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 15995302 - 15995228
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaa-aaaatagggcgcgttacatgat 236  Q
    |||||||||| ||| |||| ||||| || ||||| ||||| | ||||||||| ||||||||||||||| ||||||    
T  15995302 gtgaaaaaattagtaacgggtttttccggattttgtaatcgggaaacttcaaaaaaatagggcgcgttgcatgat 15995228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 42894366 - 42894416
Alignment:
Q  186 tttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||| ||||||||| |||||| |||||||||| |||||||||||||    
T  42894366 tttcggattatataatccggaaacttaaaaaaataggacgcgttacatgat 42894416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 2764506 - 2764543
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  2764506 attttataatccgaaaacctcaaaaaatagggagcgtt 2764543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 38308947 - 38308918
Alignment:
Q  198 taatccgaaaacttcaaaaaatagggcgcg 227  Q
    ||||||||||||||||||||||||||||||    
T  38308947 taatccgaaaacttcaaaaaatagggcgcg 38308918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 41855058 - 41855014
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||| |||||||||||||||||| | ||||||||||    
T  41855058 attttgtaatccggaaacttcaaaaaatagggtgtgttacatgat 41855014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 3703509 - 3703370
Alignment:
Q  98 cttctaaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaatttt 196  Q
    |||| |||||||  ||||||||||||| ||||||||||||||| |  ||||||| ||| |||||  |||||||||||||||||||||||||||| |||||    
T  3703509 cttccaaaaatgcccttgaagtttccggatttcataatccgaactagtgttttcctttgttatagggtgaaaaaatgagttacggattttttcggatttt 3703410  T
Q  197 ataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
     ||||||||||||||||||||||||| || ||||||||||    
T  3703409 gtaatccgaaaacttcaaaaaataggacgtgttacatgat 3703370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 38416479 - 38416612
Alignment:
Q  104 aaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatc 202  Q
    ||||||| |||||||||| |||||||||||||| |||| | ||||||| ||| |||||  ||||||||||||||| ||||||||||| |||||| |||||    
T  38416479 aaaatgtccttgaagttttcgaatttcataatctgaataggtgttttcctttgttatagggtgaaaaaatgagttgcggattttttcaaattttgtaatc 38416578  T
Q  203 cgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    || |||| | |||||||||||| |||||||||||    
T  38416579 cggaaacataaaaaaatagggcacgttacatgat 38416612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 49396921 - 49397051
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||||||||  ||||||| ||||||||||||| | |||||||||| |||||||||  ||||||||  ||||||||||||||| || ||||| ||||    
T  49396921 aaaaatgttcttggggtttccggatttcataatccggaatgatgttttcctttattatagggtgaaaaatggagttacggatttttccggattttgtaat 49397020  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttaca 232  Q
    ||| |||||||||||||||||  ||||||||    
T  49397021 ccggaaacttcaaaaaataggatgcgttaca 49397051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 6229065 - 6228931
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||| ||||| ||||| | ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||| ||||||||||| || ||||| |||     
T  6229065 aaaaatgtccttgaggtttcaggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagctacggatttttccggattttgtaac 6228966  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||| |||||||||||||||||||||||||||||||    
T  6228965 ccggaaacttcaaaaaatagggcgcgttacatgat 6228931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 23523842 - 23523953
Alignment:
Q  126 atttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggc 224  Q
    |||||||||| || | |||||||||| ||| ||| |  ||||||||  |||||||||||||||||| ||||| ||||||| ||||||||||||||||| |    
T  23523842 atttcataattcggaatgatgttttcctttgttagagggtgaaaaatggagttacggattttttcggattttgtaatccggaaacttcaaaaaataggac 23523941  T
Q  225 gcgttacatgat 236  Q
    ||||||||||||    
T  23523942 gcgttacatgat 23523953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 32441733 - 32441858
Alignment:
Q  112 cttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaact 210  Q
    ||||| ||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  |||||| ||||||||  | ||||| ||||||| |||||    
T  32441733 cttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttaaggatttttctggattttgtaatccggaaact 32441832  T
Q  211 tcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| ||||||||||||||    
T  32441833 tcaaaaaatagcgcgcgttacatgat 32441858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 25539188 - 25539068
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||| ||||| || ||||| ||||||| ||||||||||    
T  25539188 agtttccggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaa 25539089  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||  ||||||||||    
T  25539088 aaatagggcatgttacatgat 25539068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 25491621 - 25491515
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||  |||||||| ||||| ||||||| ||||||||||||||||| ||||||    
T  25491621 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgagttttttcggattttgtaatccggaaacttcaaaaaataggacgcgtt 25491522  T
Q  230 acatgat 236  Q
    |||||||    
T  25491521 acatgat 25491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 38536099 - 38536217
Alignment:
Q  119 tttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaa 217  Q
    |||||| ||||||||||||||| || ||||||| ||| |||||  ||||||||   |||||||| ||||| || ||||| |||| || ||||||||||||    
T  38536099 tttccggatttcataatccgaaatggtgttttcctttgttatagggtgaaaaatgaagttacgggtttttccggattttgtaattcggaaacttcaaaaa 38536198  T
Q  218 atagggcgcgttacatgat 236  Q
    |||||||| ||||||||||    
T  38536199 atagggcgtgttacatgat 38536217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 48319257 - 48319185
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||  ||||||| |||||||||||||||||||||||||||||||    
T  48319257 gtgaaaaaatgagtgacggatttttccggatttg-taatccggaaacttcaaaaaatagggcgcgttacatgat 48319185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 6003927 - 6003811
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||| | ||||| ||||| | ||||||||||||| | || || |||| ||| |||||  ||||||||  |||||||||||||||||||||||||||||    
T  6003927 aaaaatatccttgaggtttctggatttcataatccggaatggtggtttcctttgttatagggtgaaaaatggagttacggattttttcgaattttataat 6003828  T
Q  202 ccgaaaacttcaaaaaa 218  Q
    ||| |||||| ||||||    
T  6003827 ccggaaacttaaaaaaa 6003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 55052859 - 55052739
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||| ||||| || ||| | ||||||| ||||||||||    
T  55052859 agtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaacttcaaa 55052760  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||| |||| |||||    
T  55052759 aaatagggcgtgttagatgat 55052739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 7931632 - 7931702
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||||||||||| |||| ||||| || |||||  |||||| ||||||||||||||||||||||||||||    
T  7931632 gtgaaaaaatgagtaacgggtttttccggattttgcaatccggaaacttcaaaaaatagggcgcgttacat 7931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 46440464 - 46440394
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||| | |||| ||||| |||||||||||||||| |||||| |||||||||| |||||||||||||    
T  46440464 aaaaaatgaataacgggtttttccgaattttataatccggaaacttaaaaaaataggacgcgttacatgat 46440394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 50392599 - 50392529
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||| || ||||| ||||||| |||  ||||||||| ||||||||||||||||    
T  50392599 aaaaaatgagttacggatttttccggattttgtaatccggaaatctcaaaaaatggggcgcgttacatgat 50392529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 53894228 - 53894111
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    |||||||||  |||||||| | |||||||||||||  ||| |  |||||||||||| | |||| ||||| || |||||  |||| | |||||||||||||    
T  53894228 ttccgaattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgactaacgggtttttccggattttgcaatcaggaaacttcaaaaaa 53894129  T
Q  219 tagggcgcgttacatgat 236  Q
    ||||||||||||||||||    
T  53894128 tagggcgcgttacatgat 53894111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 29822550 - 29822666
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttctttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaat 219  Q
    ||||| ||||||||||  | | || ||||| |||| |||||  ||||||||  ||||||||| ||||| || ||||| ||||||| ||||||||||||||    
T  29822550 ttccggatttcataatatggaatggtgtttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaat 29822649  T
Q  220 agggcgcgttacatgat 236  Q
    |  ||||||||||||||    
T  29822650 acagcgcgttacatgat 29822666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 19835461 - 19835567
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||| ||||| || ||||| ||||||| ||||||  |||||||||| |||||    
T  19835461 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaactttgaaaaatagggtgcgtt 19835560  T
Q  230 acatgat 236  Q
    |||||||    
T  19835561 acatgat 19835567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 25752634 - 25752564
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| | |||||||| || ||||| ||||||| ||| ||||||||||||||||| |||||||||    
T  25752634 aaaaaatgagtaatggatttttccggattttgtaatccggaaatttcaaaaaatagggcgcattacatgat 25752564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 17933326 - 17933257
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||| | |||||||||| |  ||||| ||||||  |||||||||||||||||||||||||||||||    
T  17933326 aaaaatgaataacggatttttccagattttgtaatccagaaacttcaaaaaatagggcgcgttacatgat 17933257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 54631652 - 54631583
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| |||| ||||| || ||||| ||||||| |||||||||||| || |||||||||||||||    
T  54631652 aaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaagtatggcgcgttacatgat 54631583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 8106395 - 8106439
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||    
T  8106395 attttgtaatccgaaaacttcaaaaaatagggcgcgctacatgat 8106439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 49003006 - 49002934
Alignment:
Q  151 ctttattatactgtgaaaaaatgagttacggatttt-ttcgaattttataatccgaaaacttcaaaaaatagg 222  Q
    |||| ||||| ||||||||||||||||||  ||||| ||| |||||| |||||||||||| ||||||||||||    
T  49003006 ctttgttataatgtgaaaaaatgagttacaaattttattcaaattttgtaatccgaaaacctcaaaaaatagg 49002934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 40703645 - 40703711
Alignment:
Q  170 aatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||| |||||||||| || ||||| ||||||| ||| |||||||||||||| || |||||||||    
T  40703645 aatgagtaacggatttttccggattttgtaatccggaaatttcaaaaaatagggtgcattacatgat 40703711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 41323275 - 41323218
Alignment:
Q  179 cggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| ||||| |||||| |||||||||||||||||| | |||||||| ||||    
T  41323275 cggatttttttgaattatataattcgaaaacttcaaaaaataagacgcgttacttgat 41323218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 5865250 - 5865208
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||    
T  5865250 ttcggattttataatctgaaaatttcaaaaaatagggcgcgtt 5865208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 34972787 - 34972871
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggatttt 186  Q
    |||||||  ||||| ||||||| ||||||||||||| | || |||||| |||| |||||  ||||||||  ||||||||||||||    
T  34972787 aaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttt 34972871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 34972867 - 34972911
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||| | |||||| ||||||||||||||||||||||||    
T  34972867 attttgtaatctggaaacttaaaaaaatagggcgcgttacatgat 34972911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 27212585 - 27212709
Alignment:
Q  113 ttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaactt 211  Q
    ||||| ||| || ||||||||||||||| |||||||||| ||| |||||  ||||||||||||||||||| |||||||| ||||| |||||||||||  |    
T  27212585 ttgaaattttcggatttcataatccgaactgatgttttcctttgttatagggtgaaaaaatgagttacgggttttttcggattttgtaatccgaaaatct 27212684  T
Q  212 caaaaaatagggcgcgttacatgat 236  Q
    |||||||||||| ||||||||||||    
T  27212685 caaaaaatagggtgcgttacatgat 27212709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 33487478 - 33487611
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||| ||||| ||||||| ||||||||||||| | || ||||||| ||| ||| |  ||||||||  ||||||||| ||||| |||||||| ||||    
T  33487478 aaaaatgtccttga-gtttccggatttcataatccggaatggtgttttcctttgttacagggtgaaaaatggagttacgggtttttccgaattttgtaat 33487576  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  33487577 ccgaaaacttcaaaaaatagggcgcgttatatgat 33487611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 37095167 - 37095035
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttctttattatactgtgaaaaaatgagttacggattttttcgaattttataatc 202  Q
    |||||||  ||||| |||| |||||||||||||||| | || ||||| |||| |||||  ||||||||  ||||||||||||||| || ||||| |||||    
T  37095167 aaaaatgcccttgaggttttcgaatttcataatccggaatggtgtttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatc 37095068  T
Q  203 cgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||| |||||||| |||||||||||||||    
T  37095067 cgaaaactt-aaaaaataaggcgcgttacatgat 37095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 6156615 - 6156732
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    ||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||| ||||| || ||||| ||||||| |||||||||||||    
T  6156615 ttccggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaa 6156714  T
Q  219 tagggcgcgttacatgat 236  Q
    ||||||||||||||||||    
T  6156715 tagggcgcgttacatgat 6156732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 15799109 - 15799226
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    ||||| ||||||||||||| | || | ||||| ||| |||||  ||||||||  ||||||||| ||||| || ||||| ||||||| |||||||||||||    
T  15799109 ttccggatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaa 15799208  T
Q  219 tagggcgcgttacatgat 236  Q
    ||||||||||||||||||    
T  15799209 tagggcgcgttacatgat 15799226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 25746908 - 25747026
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttctttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaa 216  Q
    |||||||| |||| ||||| || | |||||||||||||  |  |  |||||||||||||| |||||||||| || ||||| ||||||| ||||||| |||    
T  25746908 agtttccggattttataattcggaatgatgttttcttttgttaaaagtgaaaaaatgagtaacggatttttccggattttctaatccggaaacttc-aaa 25747006  T
Q  217 aatagggcgcgttacatgat 236  Q
    ||||||||||||||||||||    
T  25747007 aatagggcgcgttacatgat 25747026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 26190552 - 26190418
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||| ||||| ||||||  | ||||||||| | | || ||||||| ||| ||||   ||||||||  ||||||||||||||| || ||||| ||||    
T  26190552 aaaaatgtccttgaggtttccagacttcataatctggaatggtgttttcctttcttatcgggtgaaaaatggagttacggatttttccggattttgtaat 26190453  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||| |||||||||||||||||| ||||||||||||    
T  26190452 ccggaaacttcaaaaaatagggtgcgttacatgat 26190418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 38871602 - 38871672
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| |||||||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||    
T  38871602 aaaaaatgagtaacggatttttccggattttgtaatccgaaaacttcataaaatagggggcgttacatgat 38871672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 12465299 - 12465226
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||  ||||||||||||||| || ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  12465299 gtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatgat 12465226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 20891497 - 20891614
Alignment:
Q  121 tccgaatttcataatccgaattgatgttttcttt-attatactgtgaaaa-aatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    |||| |||| |||||||||| || |||||||||| |||| |  ||||||| ||||||| |||||||||| || ||||| ||||||| |||||||||||||    
T  20891497 tccggattttataatccgaaatggtgttttcttttattaaatggtgaaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaa 20891596  T
Q  219 tagggcgcgttacatgat 236  Q
    ||||||  ||||||||||    
T  20891597 tagggcatgttacatgat 20891614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 38693009 - 38692902
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttc-gaattttataatccgaaaacttcaaaaaatagggcgcgt 228  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||| ||||||| ||||||| ||||||| |||||| ||||||||||||||||    
T  38693009 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggttttttccgaattttgtaatccggaaacttaaaaaaatagggcgcgt 38692910  T
Q  229 tacatgat 236  Q
    ||| ||||    
T  38692909 tacgtgat 38692902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 28083604 - 28083495
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||| ||||||||| |||| ||||| || ||||| ||||||| ||| ||||||||||||||||| ||    
T  28083604 ataatccggaatgatgttttcttttgttaaagggtgagaaaatgagtaacgggtttttccggattttgtaatccggaaaattcaaaaaatagggcgcatt 28083505  T
Q  230 acatgatatt 239  Q
    ||||||||||    
T  28083504 acatgatatt 28083495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 38372237 - 38372310
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| ||||||||||  | ||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  38372237 gtgaaaaaatgagtaacggatttttctggattttgtaatccggaaacttaaaaaaatagggcgggttacatgat 38372310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 39524672 - 39524777
Alignment:
Q  132 taatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtta 230  Q
    ||||||||| |||||||||||||  ||| |  |||||||||||||  | |||||||| || ||||| ||||||| |||||| ||||||||||||| ||||    
T  39524672 taatccgaaatgatgttttcttttgttaaagggtgaaaaaatgagcaatggatttttccggattttgtaatccggaaacttaaaaaaatagggcgtgtta 39524771  T
Q  231 catgat 236  Q
    ||||||    
T  39524772 catgat 39524777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 40620183 - 40620110
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| || ||||||| || ||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  40620183 gtgaaaaaatgagtaacagatttttccggattttgtaatccggaaacttcaaaaaatagggcacgttatatgat 40620110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 4064960 - 4064840
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||| ||||| || ||| | ||||||| |||||| |||    
T  4064960 agtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaactttaaa 4064861  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||| |||| |||||    
T  4064860 aaatagggcgtgttagatgat 4064840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 34529954 - 34530029
Alignment:
Q  164 tgaaaaaatgagttacggatttttt---cgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| ||||||||||   || ||||| |||||| ||||| ||||||||||||||| ||||||||||    
T  34529954 tgaaaaaatgagttgcggatttttttttcggattttgtaatccaaaaacctcaaaaaatagggcgtgttacatgat 34530029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 26319000 - 26319118
Alignment:
Q  118 gtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaa 216  Q
    ||||||| |||||||||| || | || ||||||| ||| |||||  ||||||||  ||||||||||||||| || ||||| | ||||| |||||||  ||    
T  26319000 gtttccggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgttatccggaaacttc-caa 26319098  T
Q  217 aatagggcgcgttacatgat 236  Q
    ||||||| ||||||||||||    
T  26319099 aatagggtgcgttacatgat 26319118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 43388259 - 43388188
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgata 237  Q
    ||||||||||||||||||| ||| | ||||| ||||||| |||  | |||||||||||||| ||||||||||    
T  43388259 aaaaaatgagttacggattcttttggattttgtaatccggaaatctaaaaaaatagggcgcattacatgata 43388188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 31221497 - 31221459
Alignment:
Q  198 taatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  31221497 taatccgaaaacttcaaaaaatatggcgcgttacatgat 31221459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 31929295 - 31929229
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||||||| |||||||||| || ||||| ||||||  ||| ||||||||||||||||| ||||||    
T  31929295 aaaaatgagtaacggatttttccggattttgtaatccagaaatttcaaaaaatagggcgcattacat 31929229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 11186340 - 11186303
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11186340 attttataatccgaaaacctcaaaaaatagggcgcgtt 11186303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 36359775 - 36359706
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||| ||||||| ||||| ||||||  |||  |||||||||||| ||||| |||||||    
T  36359775 aaaaatgagttacggaatttttcggattttgtaatccagaaatctcaaaaaataggacgcgtaacatgat 36359706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 14111854 - 14111898
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||    
T  14111854 attttgtaatccagaaacttcaaaaaatagggcgcgttacatgat 14111898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 32842149 - 32842101
Alignment:
Q  179 cggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcg 227  Q
    ||||||||| || ||||| ||||||| ||||||||||||||||||||||    
T  32842149 cggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcg 32842101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 37183975 - 37183899
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgatatt 239  Q
    |||||||||||||| || |||||||    ||||| |||||   ||||||||||||||||||| ||||||||||||||    
T  37183975 gtgaaaaaatgagtaacagatttttctagattttgtaatcttgaaacttcaaaaaatagggcacgttacatgatatt 37183899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 24203920 - 24203804
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||| |||| |||||||| | || ||||||||||  ||| |  ||| |||||||| | || |||||||||| ||||| |||||     ||||||||    
T  24203920 agtttccggattttataatccggaatggtgttttcttttgttaaagggtggaaaaatgattaacagattttttcggattttgtaatcg----acttcaaa 24203825  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||    
T  24203824 aaatagggcgcgttacatgat 24203804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 34440620 - 34440695
Alignment:
Q  112 cttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggatttt 186  Q
    ||||| ||||||||||||||||||| ||| ||||||||| |||| |||||  || |||||  ||||||||||||||    
T  34440620 cttgaggtttccgaatttcataatctgaaatgatgttttcctttgttatagggtaaaaaatggagttacggatttt 34440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 14001635 - 14001673
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggcg 225  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  14001635 ttcgaattttataatctgaaaacctcaaaaaatagggcg 14001673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 38640653 - 38640723
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| ||| ||  |||||| ||||||||||| | |||  |||||||||||||||||||| |||||    
T  38640653 aaaaaatgagctacagagattttcggattttataatctggaaatctcaaaaaatagggcgcgttaaatgat 38640723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 15957681 - 15957750
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| | |||||||| || ||||| |||| || ||||||| ||||||||||||  |||||||||    
T  15957681 aaaaatgagtaatggatttttccggattttgtaattcggaaacttcgaaaaatagggcgtattacatgat 15957750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 8739362 - 8739326
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaataggg 223  Q
    |||||| |||||||||||||||| |||||||||||||    
T  8739362 ttcgaaatttataatccgaaaacctcaaaaaataggg 8739326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 47202399 - 47202533
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| ||||||| ||||||||||||| | || ||||||||||  |||||  ||||||||  ||||||||||||||| |  ||||| ||||    
T  47202399 aaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcttttgttatagggtgaaaaatggagttacggatttttccagattttgtaat 47202498  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||||||||||||||    
T  47202499 ccgaaaacttcaaaaaatagggcgcgttacatgat 47202533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 43737090 - 43737163
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  43737090 gtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgat 43737163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 3936041 - 3936147
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||| ||||| || ||||| ||||||| ||||||||||||||||||||||||    
T  3936041 ataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgtt 3936140  T
Q  230 acatgat 236  Q
    |||||||    
T  3936141 acatgat 3936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 37518521 - 37518416
Alignment:
Q  131 ataatccgaattgatgttttcttt-attatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    ||||||| || ||||||||||||| |||| |  |||||||||| ||| |||||||||| || ||||||||||||  |||||||||||||||||||| |||    
T  37518521 ataatccaaaatgatgttttcttttattaaagggtgaaaaaataagtaacggatttttccggattttataatccagaaacttcaaaaaatagggcgtgtt 37518422  T
Q  230 acatga 235  Q
    ||||||    
T  37518421 acatga 37518416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 19225825 - 19225718
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttc-gaattttataatccgaaaacttcaaaaaatagggcgcgt 228  Q
    ||||| |||| |||||||||||||  ||| |  |||||||||||||| |||||||||||| | ||||| |||||| ||||||||||||||||||| ||||    
T  19225825 ataattcgaaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttccggattttgtaatccaaaaacttcaaaaaatagggtgcgt 19225726  T
Q  229 tacatgat 236  Q
    ||||||||    
T  19225725 tacatgat 19225718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 8154876 - 8154938
Alignment:
Q  174 agttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  8154876 agttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgat 8154938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 28230658 - 28230588
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||||| ||||    
T  28230658 aaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacttgat 28230588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 42925878 - 42925761
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    ||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||| ||||| |  ||||| ||||||| |||||||||||||    
T  42925878 ttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttcctgattttgtaatccggaaacttcaaaaaa 42925779  T
Q  219 tagggcgcgttacatgat 236  Q
    |||||||| |||||||||    
T  42925778 tagggcgcattacatgat 42925761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 24042428 - 24042308
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||| |||||||||||| || | || ||||||| |||  ||||  ||||||||  ||||||||| ||||| || ||||| ||||||| ||||||||||    
T  24042428 agtttctgaatttcataattcggaatggtgttttcctttgatatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaa 24042329  T
Q  216 aaatagggcgcgttacatgat 236  Q
    ||||| |||||||||||||||    
T  24042328 aaataaggcgcgttacatgat 24042308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 36468729 - 36468656
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||  | |||||||||||||||||||| ||||||||||    
T  36468729 gtgaaaaaatgagtaacggatttttccggattttgtaatatggaaacttcaaaaaatagggcgtgttacatgat 36468656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 36629171 - 36629244
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||| |  ||||| ||||||||||||||||||||||||    
T  36629171 gtgaaaaaatgagtaacggatttttccggattttgtaatctggtaacttaaaaaaatagggcgcgttacatgat 36629244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 28349323 - 28349227
Alignment:
Q  118 gtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttca 213  Q
    ||||||| ||||||||||| ||| || |||||| |||| ||| |  |||||||||||||||||| ||||||  ||||||| ||||||||||||||||    
T  28349323 gtttccggatttcataatcggaaatggtgtttttctttgttaaatggtgaaaaaatgagttacgaatttttctgaattttgtaatccgaaaacttca 28349227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 9151780 - 9151850
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||||||||||| || | ||||| || ||||| ||||||| ||||||||||||||||||||| ||||||    
T  9151780 gtgaaaaaatgagtaacaggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcattacat 9151850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 28346048 - 28346173
Alignment:
Q  98 cttctaaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaatttt 196  Q
    ||||||||||||   |||||||||| ||||||||||||| | | |||||||||| ||| ||| |  |  |||||||||||||||||| ||| ||||||||    
T  28346048 cttctaaaaatgcctttgaagtttctgaatttcataatctggaatgatgttttcctttgttaaagaga-aaaaaatgagttacggatgtttccgaatttt 28346146  T
Q  197 ataatccgaaaacttcaaaaaataggg 223  Q
     ||||||  |||||||||||| |||||    
T  28346147 gtaatccagaaacttcaaaaagtaggg 28346173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 36408340 - 36408410
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| |||||||||| || ||||| ||||||  ||||||||||||||| |||||| ||||||||    
T  36408340 aaaaaatgagtaacggatttttccggattttgtaatccagaaacttcaaaaaataaggcgcgatacatgat 36408410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 43185784 - 43185819
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagg 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  43185784 ttcgaattttataatccgaaaacttcaaaaaatagg 43185819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 3304997 - 3304875
Alignment:
Q  119 tttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaa-aa 216  Q
    |||||| ||||||||||  | | || ||||||| ||| |||||  ||||||||  ||||||||||||||| || ||||| ||||||  ||||||||| ||    
T  3304997 tttccggatttcataatttggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatccagaaacttcaaaaa 3304898  T
Q  217 aatagggcgcgttacatgatatt 239  Q
    ||||||| | |||||||||||||    
T  3304897 aatagggtgtgttacatgatatt 3304875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 33574216 - 33574154
Alignment:
Q  174 agttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||||| | ||||| ||||||| |||||| ||||||||||| ||||||||||||    
T  33574216 agttatggatttttttggattttgtaatccggaaactttaaaaaatagggtgcgttacatgat 33574154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 31642955 - 31643080
Alignment:
Q  112 cttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaact 210  Q
    ||||| ||||||| ||||||||||| | | || ||||||| ||| |||||  ||||||||  |||||||||||||||  | || || ||||  | |||||    
T  31642955 cttgaggtttccggatttcataatctggaatggtgttttcgtttgttatagggtgaaaaatggagttacggatttttctggatcttgtaatttggaaact 31643054  T
Q  211 tcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||| | ||||||||||    
T  31643055 tcaaaaaatagggtgtgttacatgat 31643080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 37218274 - 37218237
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggc 224  Q
    |||| |||||||||||||||||||||||||||||||||    
T  37218274 ttcggattttataatccgaaaacttcaaaaaatagggc 37218237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 26555236 - 26555161
Alignment:
Q  163 gtgaaaaaatgagttacggatttttt--cgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| ||||| |||||||||  || ||||| ||||||||| |   |||||||||||||||||||||||||    
T  26555236 gtgaaaaaattagttaaggattttttttcggattttgtaatccgaatatcacaaaaaatagggcgcgttacatgat 26555161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 7115444 - 7115391
Alignment:
Q  183 ttttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||| ||| ||||||||||| || ||||||||||||| ||||||| ||||    
T  7115444 ttttttcggattatataatccgaagacctcaaaaaatagggtgcgttacttgat 7115391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 23442643 - 23442777
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| ||||||| ||||||| ||||| | |||||||||| ||| |||||  ||||||||  ||||||||||||||| || ||||||||||    
T  23442643 aaaaatgcccttgaggtttccggatttcattatccggaatgatgttttcctttgttataaggtgaaaaatggagttacggatttttccggattttataat 23442742  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    | | |||||||||||||||||||||||||||||||    
T  23442743 ctggaaacttcaaaaaatagggcgcgttacatgat 23442777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 52745011 - 52744934
Alignment:
Q  162 tgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgatatt 239  Q
    ||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  52745011 tgtgaaaaaatgagtaacggatttttccgaattttgtaatctgaaaacttcaaaaaatagggcgcgctacatgatatt 52744934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 6223969 - 6223857
Alignment:
Q  126 atttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaa-aaaataggg 223  Q
    ||||||||||||||| |  ||||||| ||| |||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||| |    
T  6223969 atttcataatccgaactcgtgttttcctttgttatagggtgaaaaaatgagttacggattttttcgaatttttcaatccgaaaacttcaaaaaaatagag 6223870  T
Q  224 cgcgttacatgat 236  Q
    ||| |||||||||    
T  6223869 cgcattacatgat 6223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 44573289 - 44573216
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| || |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  44573289 gtgaaaaaatgagtaacagattttttcggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgat 44573216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 27794760 - 27794893
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  |||||| ||| || ||||||||||||||| || ||||||| ||| |||||  |||||||||||||||| ||||||||||  ||||| ||||    
T  27794760 aaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttgttatagggtgaaaaaatgagttatggattttttcagattttgtaat 27794859  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||  || ||||||||||||| |||||||||    
T  27794860 ccgaaaatctc-aaaaatagggcgctttacatgat 27794893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 33611664 - 33611530
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| ||||| | ||||||||||||  | || |||||| |||| |||||  ||||||||  |||||||||||||||||| ||||| ||||    
T  33611664 aaaaatgcccttgaggtttctggatttcataatccagaatggtgtttttctttgttatagggtgaaaaatggagttacggattttttcggattttgtaat 33611565  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
      | |||||||||||||||||||||||||||||||    
T  33611564 ttggaaacttcaaaaaatagggcgcgttacatgat 33611530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 40650865 - 40650795
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| ||||||||||||| | ||| ||||||| |||||||||||||||||||| ||||||||||    
T  40650865 aaaaaatgagtaacggattttttcggaatttgtaatccggaaacttcaaaaaatagggcgtgttacatgat 40650795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 49786175 - 49786308
Alignment:
Q  104 aaaatgttcttgaagtttccgaatttcataatccg-aattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  |||| ||||||| ||||||||||| | ||||| ||||||| |||||||||  ||||||||  |||||| |||||||| || |||||  |||    
T  49786175 aaaatgtctttgaggtttccggatttcataatctggaattg-tgttttcctttattatagggtgaaaaatggagttatggatttttccggattttgcaat 49786273  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| |||||||||| |||||||||||||    
T  49786274 ccgaaaactttaaaaaataggacgcgttacatgat 49786308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 15070079 - 15069962
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    |||||||||  |||||||||| |||||||||||||  ||| |  | ||| |||||||| |||||| |||||| ||||| ||||||| |||||||||||||    
T  15070079 ttccgaattatataatccgaaatgatgttttcttttgttaaagggagaacaaatgagtaacggatattttcggattttgtaatccggaaacttcaaaaaa 15069980  T
Q  219 tagggcgcgttacatgat 236  Q
    |||| || ||||||||||    
T  15069979 taggacgtgttacatgat 15069962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 45568066 - 45567993
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgatatt 239  Q
    ||||||||||| |||| ||||| |||||||| |||| || |||||||||||||||||||||| |||||||||||    
T  45568066 aaaaaatgagtaacgggtttttccgaattttgtaattcggaaacttcaaaaaatagggcgcgctacatgatatt 45567993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 40908165 - 40908054
Alignment:
Q  126 atttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggc 224  Q
    |||| |||||||||| || ||||||||||  ||| |  |||||||||||||| ||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  40908165 attttataatccgaaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggattttttagaattttgcaatccggaaacttcaaaaaattgggc 40908066  T
Q  225 gcgttacatgat 236  Q
    | | ||||||||    
T  40908065 gtgctacatgat 40908054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 18583798 - 18583664
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| |||| || ||||||||||||| | || ||||||| ||| |||||  ||||||||   ||||||||| |||| || ||||| ||||    
T  18583798 aaaaatgcccttgaggttttcggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggacttttccggattttgtaat 18583699  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    | | |||||| ||||||||||||||||||||||||    
T  18583698 ctggaaacttaaaaaaatagggcgcgttacatgat 18583664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 32817837 - 32817731
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||| ||||| |  ||||| ||||||| ||||||||||||||||||||| ||    
T  32817837 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccagattttgtaatccggaaacttcaaaaaatagggcgcatt 32817738  T
Q  230 acatgat 236  Q
    |||||||    
T  32817737 acatgat 32817731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 34162962 - 34162841
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttc-gaattttataatccgaaaacttcaa 214  Q
    |||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||| ||| ||||||| | ||||| ||||||| |||||||||    
T  34162962 agtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttgcgggttttttccggattttgtaatccggaaacttcaa 34162863  T
Q  215 aaaatagggcgcgttacatgat 236  Q
    ||||||||||| |||| |||||    
T  34162862 aaaatagggcgtgttagatgat 34162841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 42545937 - 42546006
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||| | |||||||||| || ||||| ||||||| ||||||||||||||||| |||||||||||||    
T  42545937 aaaaatgaataacggatttttccggattttgtaatccggaaacttcaaaaaataggacgcgttacatgat 42546006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 43319389 - 43319316
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||||||||||||||| || ||||| ||||||| |||  | |||||||| |||||||||||||||    
T  43319389 gtgaaaaaatgagttacggatttttccggattttgtaatccggaaatctaaaaaaatatggcgcgttacatgat 43319316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 45047041 - 45046982
Alignment:
Q  165 gaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggc 224  Q
    |||||||||||| |||||||||| || ||||| ||||||||||||||||||||| |||||    
T  45047041 gaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttcaaaaaagagggc 45046982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 7011178 - 7011249
Alignment:
Q  167 aaaaatgagttacggattttttc-gaattttataatccgaaaacttcaaaaaata-gggcgcgttacatgat 236  Q
    |||||||||| |||||||||||| | ||||| ||||||| ||||||||||||| | ||||||||||||||||    
T  7011178 aaaaatgagtaacggattttttctggattttgtaatccggaaacttcaaaaaaaaagggcgcgttacatgat 7011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 49677475 - 49677522
Alignment:
Q  189 cgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||    
T  49677475 cgaattttgtaatctggaaacttcaaaaaatagggcgcgttacatgat 49677522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24472994 - 24472950
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||    
T  24472994 attttataatccgaaaacttcaaaaaatagggtgcgctacttgat 24472950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 890498 - 890536
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggcg 225  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  890498 ttcggattttataatccgaaaacctcaaaaaatagggcg 890536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 26723660 - 26723614
Alignment:
Q  179 cggattttttcgaattttataatccgaaaacttcaaaaaatagggcg 225  Q
    |||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  26723660 cggatttttttggattttgtaatccggaaacttcaaaaaatagggcg 26723614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 24471558 - 24471474
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggatttt 186  Q
    |||||||| ||||| ||||||| ||||||||||||| | || |||||| |||| |||||  ||| ||||  ||||||||||||||    
T  24471558 aaaaatgtccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgcaaaatggagttacggatttt 24471474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 30829629 - 30829586
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  30829629 attttgtaatccggaaacttcaaaaa-tagggcgcgttacatgat 30829586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 30829709 - 30829625
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggatttt 186  Q
    |||||||  ||||||||||||| ||||||||||||| | || |||||| |||| |||||  ||||||||   |||||||||||||    
T  30829709 aaaaatgcccttgaagtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggatttt 30829625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 32542391 - 32542435
Alignment:
Q  192 attttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||| || ||||||||||||||| ||||||||||||    
T  32542391 attttgtaatccggaatcttcaaaaaatagggtgcgttacatgat 32542435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 5699477 - 5699597
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||| |||||||||||||| ||||||| |||||| |||    
T  5699477 agtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggttttttcgaattttgtaatccggaaacttgaaa 5699576  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||    
T  5699577 aaatagggcgcgttacatgat 5699597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 24604617 - 24604482
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaa-tgagttacggattttttcgaattttataa 200  Q
    |||||||| |||||||||| || |||||||| |||||| || ||||||| ||| | |||  ||||||||| ||||||| |||||||| |||||||| |||    
T  24604617 aaaaatgtccttgaagttttcggatttcatattccgaactggtgttttcctttgtcatagggtgaaaaaaatgagttaaggatttttccgaattttgtaa 24604518  T
Q  201 tccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||| |||||||||||||||||||||  |||||||||    
T  24604517 tccaaaaacttcaaaaaatagggcgtcttacatgat 24604482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 32035026 - 32035152
Alignment:
Q  111 tcttgaagtttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaac 209  Q
    |||||| |||| || ||||||||||| | | |||||||||||||  |||||   |||||||  ||||||||||||||| || ||||| ||||||| ||||    
T  32035026 tcttgaggttttcggatttcataatctggaatgatgttttcttttgttatatgatgaaaaatggagttacggatttttccggattttgtaatccggaaac 32035125  T
Q  210 ttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||||||    
T  32035126 ttcaaaaaatagggcgcgttacatgat 32035152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 1945722 - 1945652
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||    
T  1945722 gtgaaaaaatgagttacggatttttccggattttgtaatccgaaaacttcaaaaactagggtgcgttacat 1945652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 14587753 - 14587680
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| | |||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||    
T  14587753 gtgaaaaaatgagtaagggatttttccggattttgtaatccgaaaactttaaaaaatagggcgcgttacatgat 14587680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 17264376 - 17264449
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||| | |||||||||||||||||||||||||||||||    
T  17264376 gtgaaaaaatgagtaacggatttttccggattttgtaatctggaaacttcaaaaaatagggcgcgttacatgat 17264449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 33413590 - 33413467
Alignment:
Q  113 ttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaactt 211  Q
    |||| ||||||| ||||||||||||| | || ||||||| ||| |||||  ||||||||  |||||||| ||||||  ||||||| ||||||| ||||||    
T  33413590 ttgatgtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgaatttttctgaattttgtaatccggaaactt 33413491  T
Q  212 caaaaaatagggcgcgttacatgat 236  Q
    || ||||||||||||||||||||||    
T  33413490 ca-aaaatagggcgcgttacatgat 33413467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 7412794 - 7412867
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||| ||||| || ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  7412794 gtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatgat 7412867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 4508555 - 4508422
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||| ||| ||||||||| |||| |||||||  | || ||||||||||  ||| |  |||||||||||||| |||||||||| || ||||||||||    
T  4508555 aaaaatgtcctt-aagtttccggattttataatccagaatggtgttttcttttgttagagggtgaaaaaatgagtaacggatttttccggattttataat 4508457  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||  ||| |||||||| ||||||| ||||||||||    
T  4508456 ccagaaatttcaaaaattagggcgtgttacatgat 4508422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 3717476 - 3717403
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| | ||  |||| |||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  3717476 gtgaaaaaatgagtaatgggcttttccgaattttgtaatccggaaacttcaaaaattagggcgcgttacatgat 3717403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 23406717 - 23406829
Alignment:
Q  119 tttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaa 217  Q
    |||||| ||||| ||||||| | || ||||||| ||| |||||  ||||||||  ||||||||  ||||| |||||||  ||||||| ||||||||||||    
T  23406717 tttccggatttcgtaatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgagtttttccgaatttcgtaatccggaaacttcaaaaa 23406816  T
Q  218 atagggcgcgtta 230  Q
    |||||||||||||    
T  23406817 atagggcgcgtta 23406829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 2813479 - 2813344
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaat--tttata 199  Q
    |||||||||||||| | ||||| |||||||||| || | || ||||||| |||||||||  ||||||||  ||||||| ||||||| || ||  ||| ||    
T  2813479 aaaaatgttcttga-gcttccggatttcataattcggaatggtgttttcctttattatagggtgaaaaatggagttacagatttttccggatattttgta 2813381  T
Q  200 atccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| ||||||||||||||| || | ||||||||||    
T  2813380 atccggaaacttcaaaaaataaggtgtgttacatgat 2813344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 50716171 - 50716291
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||||||||||||||||| | || | ||||| ||| |||||  ||||||||  ||||||||| |||||||| ||||| ||||||||||||||||||    
T  50716171 agtttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattttgtaatccgaaaacttcaaa 50716270  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||| ||||||||||    
T  50716271 aaatagggcgtgttacatgat 50716291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 50796676 - 50796556
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||||||||||||||||| | || | ||||| ||| |||||  ||||||||  ||||||||| |||||||| ||||| ||||||||||||||||||    
T  50796676 agtttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattttgtaatccgaaaacttcaaa 50796577  T
Q  216 aaatagggcgcgttacatgat 236  Q
    |||||||||| ||||||||||    
T  50796576 aaatagggcgtgttacatgat 50796556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 47301923 - 47302058
Alignment:
Q  102 taaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataa 200  Q
    ||||||||| |||||||||| || |||||||||| || | || ||||||| ||| |||||  ||||||||  |||||| |||||||| || ||||| |||    
T  47301923 taaaaatgtccttgaagttttcggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttatggatttttccggattttgtaa 47302022  T
Q  201 tccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||| |||||| |||||||| |||||||||||||||    
T  47302023 tccggaaacttaaaaaaataaggcgcgttacatgat 47302058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 49096480 - 49096347
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatg-ttttctttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||| ||||||||||||||||||||||||| | | ||||| |||||||||||| |  ||| |||||| |||||||||||||| || ||||| ||||    
T  49096480 aaaaatgtccttgaagtttccgaatttcataatctggaatgatgtttttctttattaaagggtg-aaaaataagttacggatttttccggattttgtaat 49096382  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||| |||  |||||||||| |||  ||||||||||    
T  49096381 ccggaaatctcaaaaaatatggcatgttacatgat 49096347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 33438488 - 33438561
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| ||| ||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  33438488 gtgaaaaaataagtaacggatttttctgaattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgat 33438561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 51258308 - 51258438
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatcc-gaattgatgtttt-ctttattatactgtgaaaaaatgagttacggattttttcgaattttataa 200  Q
    |||||||| ||||||||||| | |||||||||||| |||||| |||||| |||| ||| |  ||| ||||||||||||||||||||| || ||||| |||    
T  51258308 aaaaatgtccttgaagtttctggatttcataatccggaattg-tgttttcctttgttaaagggtg-aaaaatgagttacggatttttccggattttgtaa 51258405  T
Q  201 tccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||  ||| ||||||||||||||||||||||||    
T  51258406 tccataaatttcaaaaaatagggcgcgttacat 51258438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 3937293 - 3937427
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| ||||||| |||| |||||||  | || ||||||| ||| |||||   |||||||  ||||||||  ||||| |||||||| ||||    
T  3937293 aaaaatgcccttgaggtttccggattttataatccagaatggtgttttcctttgttataggatgaaaaatggagttacgagtttttccgaattttgtaat 3937392  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||| |||||||||||||||||||||||||||||||    
T  3937393 ccggaaacttcaaaaaatagggcgcgttacatgat 3937427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 48303896 - 48304030
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| ||||||  ||||||||||||| | || ||||||| ||| ||| |  ||||||||||||||||||||||||| || ||||| ||||    
T  48303896 aaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttacggatttttccggattttgtaat 48303995  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||| |||  ||||||||||||| | ||||||||||    
T  48303996 ccggaaatctcaaaaaatagggtgtgttacatgat 48304030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 3903043 - 3902926
Alignment:
Q  120 ttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaa 218  Q
    ||||| ||||||||||||| | || ||||||| ||| |||||  |||||||   ||||||| | ||||| || ||||| |||||||||||||||||||||    
T  3903043 ttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaagtggagttactggtttttccggattttgtaatccgaaaacttcaaaaaa 3902944  T
Q  219 tagggcgcgttacatgat 236  Q
    ||| ||||||||||||||    
T  3902943 tagagcgcgttacatgat 3902926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 34821589 - 34821516
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| ||||| |||| || ||||| ||||||| |||||||||||||||||||||||||| ||||    
T  34821589 gtgaaaaaatgagtaacggaattttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacctgat 34821516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 45244356 - 45244428
Alignment:
Q  164 tgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||||| |||||||| || ||||| |||| ||||||  ||||||||||||||||||||||||||    
T  45244356 tgaaaaaatgagttatggatttttccggattttgtaattcgaaaatctcaaaaaatagggcgcgttacatgat 45244428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 47123072 - 47123135
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgc 226  Q
    |||||||||||||| |||| ||||| |||||||| ||||||| |||||||||||||||||||||    
T  47123072 gtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaaatagggcgc 47123135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 47130438 - 47130501
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgc 226  Q
    |||||||||||||| |||| ||||| |||||||| ||||||| |||||||||||||||||||||    
T  47130438 gtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaaatagggcgc 47130501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 47740158 - 47740052
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||  || ||||||| |  ||||| ||||||| ||||||||||||||||||||||||    
T  47740158 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagcaacagatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgtt 47740059  T
Q  230 acatgat 236  Q
    |||||||    
T  47740058 acatgat 47740052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 51540804 - 51540734
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| ||||||||||  | |||||  |||||| |||||||||||||||||||||||||||||||    
T  51540804 aaaaaatgagtaacggatttttctggattttggaatccggaaacttcaaaaaatagggcgcgttacatgat 51540734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 30722063 - 30721939
Alignment:
Q  104 aaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaa-tgagttacggattttttcgaattttataat 201  Q
    |||||| | |||| |||| || ||||||||||| ||| || ||||||| ||| |||||  ||||||||| ||||||| |||| ||||   ||||| ||||    
T  30722063 aaaatgcttttgatgttttcggatttcataatctgaactggtgttttcctttgttatagagtgaaaaaaatgagttatggatgtttttagattttgtaat 30721964  T
Q  202 ccgaaaacttcaaaaaatagggcgc 226  Q
    |||||||||||||||||||||||||    
T  30721963 ccgaaaacttcaaaaaatagggcgc 30721939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 38977941 - 38977870
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatg 234  Q
    |||||||||| ||| ||||||||||    ||||| ||||||| |||||||||||||||||||||||||||||    
T  38977941 gtgaaaaaataagtaacggatttttctagattttgtaatccggaaacttcaaaaaatagggcgcgttacatg 38977870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 28872910 - 28873039
Alignment:
Q  104 aaaatgttcttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggattttttcgaattttataatc 202  Q
    ||||||| ||||| |||| || ||||||||||| | | ||||||||| |||| |||||  ||||||||   |||||||  |||||  | |||||||||||    
T  28872910 aaaatgtccttga-gttttcggatttcataatctggaatgatgtttttctttgttatagggtgaaaaatgaagttacgagtttttctggattttataatc 28873008  T
Q  203 cgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||| ||||||||||||| ||||||||||    
T  28873009 cgaaaatttcaaaaaataggacgcgttacat 28873039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 501314 - 501261
Alignment:
Q  183 ttttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||    
T  501314 tttttccggattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgat 501261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 46622977 - 46622904
Alignment:
Q  164 tgaaaaaatgagttacggattttttcgaattttat-aatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||||| |||||||||| || ||||||| || ||| ||||||||||||||||| | |||||||||||    
T  46622977 tgaaaaaatgagtaacggatttttccggattttataaaaccggaaacttcaaaaaataggacacgttacatgat 46622904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 2358854 - 2358742
Alignment:
Q  126 atttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaa-aaaataggg 223  Q
    ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||||||||   | ||||| ||||||| ||||||||| |||||||||    
T  2358854 atttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttcctggattttgtaatccggaaacttcaaaaaaataggg 2358755  T
Q  224 cgcgttacatgat 236  Q
    || ||||||||||    
T  2358754 cgtgttacatgat 2358742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 34821510 - 34821463
Alignment:
Q  189 cgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  34821510 cgaattttgtaatccggaaacttcaaaaaatagagcgcgttacatgat 34821463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 3352256 - 3352186
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| ||| |||||| | |||||| ||||| | |||||| ||||||||||| ||||||||||||    
T  3352256 aaaaaatgagtaacgaatttttccaaattttgtaatcaggaaacttaaaaaaatagggtgcgttacatgat 3352186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 35142055 - 35142113
Alignment:
Q  178 acggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| ||  |||| ||||||| |||||||||||| ||||||||||||||||||    
T  35142055 acggatttttccgggttttgtaatccggaaacttcaaaaattagggcgcgttacatgat 35142113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 42936583 - 42936659
Alignment:
Q  112 cttgaagtttccgaatttcataatccgaattgatgtttt-ctttattatactgtgaaaaaatgagttacggattttt 187  Q
    ||||||||||||| ||||||||||||| | || |||||| |||| ||| |  ||||||||| |||||||||||||||    
T  42936583 cttgaagtttccggatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaaggagttacggattttt 42936659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 42936685 - 42936736
Alignment:
Q  182 attttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||| || ||||| |||||||||||||||||||||||||| ||| |||||    
T  42936685 atttttccggattttgtaatccgaaaacttcaaaaaatagggtgcgctacat 42936736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 39149776 - 39149845
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||||||| ||  |||||||||| || ||||| ||||||  ||||| ||||||||||||||||||||||    
T  39149776 gtgaaaaaattagcaacggatttttccggattttgtaatccagaaact-caaaaaatagggcgcgttacat 39149845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 51492814 - 51492847
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaata 220  Q
    |||| |||||||||||||||||||||||||||||    
T  51492814 ttcggattttataatccgaaaacttcaaaaaata 51492847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 43473203 - 43473155
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc 151  Q
    |||||||| ||||| ||||||||||||||||||||| | || |||||||    
T  43473203 aaaaatgtccttgaggtttccgaatttcataatccggaatggtgttttc 43473155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 41530569 - 41530708
Alignment:
Q  98 cttctaaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaatttt 196  Q
    |||| |||||||  ||||||||||| | |||| |||||||| | |||||||||| ||| ||| |  ||| ||||||||||||||||||||| ||||||||    
T  41530569 cttccaaaaatgcccttgaagtttctggattttataatccggaatgatgttttcctttgttaaagggtggaaaaatgagttacggatttttccgaatttt 41530668  T
Q  197 ataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
     ||||||| |||  ||||||||||||||||||||||||||    
T  41530669 gtaatccggaaatctcaaaaaatagggcgcgttacatgat 41530708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 27928134 - 27928061
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  27928134 gtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgat 27928061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 8885679 - 8885573
Alignment:
Q  131 ataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgtt 229  Q
    |||||||| | |||||||||||||  ||| |  |||||||||||||| |||| ||||| || ||||| ||||||| ||||||||||||||||||||||||    
T  8885679 ataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgtt 8885580  T
Q  230 acatgat 236  Q
    |||||||    
T  8885579 acatgat 8885573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 44106189 - 44106262
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||| |||||||||| |  ||||| ||||||| |||||||||||||||||||||||||||||||    
T  44106189 gtgaaaaaatgagtaacggatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgttacatgat 44106262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 21004295 - 21004426
Alignment:
Q  103 aaaaatgttcttgaagtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataat 201  Q
    |||||||  ||||| ||||||  ||||||||||||| | || ||||||| ||| |||||  ||||||||  ||||||||||||||| || ||||| ||||    
T  21004295 aaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaat 21004394  T
Q  202 ccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    ||| |||||| |||||||| ||||||||||||    
T  21004395 ccggaaactttaaaaaataaggcgcgttacat 21004426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 42281087 - 42281017
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacat 233  Q
    |||||||||||||| |||||||||| || ||||  |||||||||||||||||||||||| |||||||||||    
T  42281087 gtgaaaaaatgagtaacggatttttccggatttcgtaatccgaaaacttcaaaaaatagagcgcgttacat 42281017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 36404347 - 36404274
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||| || || ||||| |||||||||||  ||||||||||||||| ||||||||||    
T  36404347 gtgaaaaaatgagttacggattattccggattttgtaatccgaaaatctcaaaaaatagggcgtgttacatgat 36404274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 3094647 - 3094720
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||  ||||||||| ||||| || ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  3094647 gtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcattacatgat 3094720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 28916749 - 28916822
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| || |||| ||||| || ||||| ||||||| ||||||||||||||||||||||||| |||||    
T  28916749 gtgaaaaaatgggtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttaaatgat 28916822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 34853301 - 34853368
Alignment:
Q  168 aaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||| |||| ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||    
T  34853301 aaaatgagt-acgggtttttccggattttgtaatccgaaaactttaaaaaatagggcgcgttacatgat 34853368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 37248477 - 37248597
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaa 215  Q
    |||||||| |||||| |||||  | || ||||||| ||| |||||  ||||||||  ||||||||| |||||  | ||||| |||||||||||||| |||    
T  37248477 agtttccggatttcaaaatccagaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttctggattttgtaatccgaaaacttaaaa 37248576  T
Q  216 aaatagggcgcgttacatgat 236  Q
    ||||||||||||||| |||||    
T  37248577 aaatagggcgcgttagatgat 37248597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 31520085 - 31520012
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||  ||||||||| ||||| || ||||| ||||||  |||||||||||||||| ||||||||||||||    
T  31520085 gtgaaaaatggagttacggctttttccggattttgtaatccagaaacttcaaaaaatagagcgcgttacatgat 31520012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 17120055 - 17120009
Alignment:
Q  181 gattttttcgaattttataatccgaaaacttcaaaaaatagggcgcg 227  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||    
T  17120055 gattttttcggattatataatccgaaaacttcaaaaaattgggcgcg 17120009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 16310565 - 16310638
Alignment:
Q  163 gtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||  ||||||| | ||||| || ||||| ||||||| |||||||||||||||||| |||||| |||||    
T  16310565 gtgaaaaatggagttacaggtttttccggattttgtaatccggaaacttcaaaaaatagggtgcgttagatgat 16310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 10840925 - 10840881
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggcgcgttac 231  Q
    |||| |||||||||||||||||| |||||||||||||||| ||||    
T  10840925 ttcggattttataatccgaaaacctcaaaaaatagggcgcattac 10840881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 9073473 - 9073543
Alignment:
Q  166 aaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||||| ||||| ||||||| ||||  ||||||| ||||||||||||||| |   |||||||||||    
T  9073473 aaaaaatgagtaacggactttttcggatttgttaatccggaaacttcaaaaaataagattcgttacatgat 9073543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 40392524 - 40392562
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggcg 225  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  40392524 ttcggattttataatccaaaaacttcaaaaaatagggcg 40392562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 1076542 - 1076575
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaata 220  Q
    |||| |||||||||||||||||||||||||||||    
T  1076542 ttcggattttataatccgaaaacttcaaaaaata 1076575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 35676715 - 35676658
Alignment:
Q  179 cggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||||| || ||||| ||||||| ||||| |||||||||||||||| || |||||    
T  35676715 cggatttttccggattttgtaatccggaaactacaaaaaatagggcgcgctatatgat 35676658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 33472057 - 33472097
Alignment:
Q  187 ttcgaattttataatccgaaaacttcaaaaaatagggcgcg 227  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  33472057 ttcggattctataatccgaaaacctcaaaaaatagggcgcg 33472097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 23092 - 23161
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| || |||||||||    
T  23092 aaaaatgagtaacggatttttccgaattttataatccggaaacttcaaaaaatagggtgcattacatgat 23161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 9734 - 9617
Alignment:
Q  120 ttccgaatttcataatccg-aattgatgttttc-tttattatactgtgaaaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaa 217  Q
    ||||| |||||||||| || ||||| ||||||| ||| |||||  ||||||||  ||||||||| ||||| |||||||| ||||||| ||||||||||||    
T  9734 ttccggatttcataattcggaattg-tgttttcctttgttatagggtgaaaaatagagttacgggtttttccgaattttgtaatccggaaacttcaaaaa 9636  T
Q  218 atagggcgcgttacatgat 236  Q
    ||||| |||||||||||||    
T  9635 ataggacgcgttacatgat 9617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 3637 - 3515
Alignment:
Q  117 agtttccgaatttcataatccgaattgatgttttcttta-ttatactgtgaaaaaatgagttacggatttttt--cgaattttataatccgaaaacttca 213  Q
    ||||||||||| | |||||||| | || ||||||||||  ||| |  |||||||||||||| ||| |||||||  |||||||| |||||   ||||||||    
T  3637 agtttccgaatcttataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacgaattttttttcgaattttgtaatctagaaacttca 3538  T
Q  214 aaaaatagggcgcgttacatgat 236  Q
    |||||||||||||||||||||||    
T  3537 aaaaatagggcgcgttacatgat 3515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 142152 - 142083
Alignment:
Q  167 aaaaatgagttacggattttttcgaattttataatccgaaaacttcaaaaaatagggcgcgttacatgat 236  Q
    ||||||| || || ||||||| |  ||||| ||||||| |||||||||||||||||||||||||||||||    
T  142152 aaaaatgtgtaacagatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgttacatgat 142083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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