View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_74 (Length: 238)
Name: NF2696_high_74
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_74 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 38043035 - 38043220
Alignment:
| Q |
1 |
ctcttctgccatggtttctaattcttctaagagacaaagagagaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38043035 |
ctcttctgctatggtttctaattcttctaagagacaaagagagaagacaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggt |
38043134 |
T |
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| Q |
101 |
cccaattaattctttgatctttcttcacgtattgtgcaatattattgaaagatattgatgtaaattatgatgaattaatgaagata |
186 |
Q |
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| T |
38043135 |
cccaattaattctttgatctttcttcacgtattgtgcaatattattgaaagatattgatgtaaattatgatgaattaatgaagata |
38043220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 38067382 - 38067567
Alignment:
| Q |
1 |
ctcttctgccatggtttctaattcttctaagagacaaagagagaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38067382 |
ctcttctgctatggtttctaattcttctaagagacaaagagagaagacaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggt |
38067481 |
T |
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| Q |
101 |
cccaattaattctttgatctttcttcacgtattgtgcaatattattgaaagatattgatgtaaattatgatgaattaatgaagata |
186 |
Q |
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| T |
38067482 |
cccaattaattctttgatctttcttcacgtattgtgcaatattattgaaagatattgatgtaaattatgatgaattaatgaagata |
38067567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 38028395 - 38028503
Alignment:
| Q |
1 |
ctcttctgccatggtttctaattcttctaagagacaaagagagaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028395 |
ctcttctgctatggtttctaattcttctaagagacaaagagagaagacaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggt |
38028494 |
T |
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| Q |
101 |
cccaattaa |
109 |
Q |
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||||||||| |
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| T |
38028495 |
cccaattaa |
38028503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 38045041 - 38045147
Alignment:
| Q |
2 |
tcttctgccatggtttctaattcttctaagagacaaagagagaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtc |
101 |
Q |
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|||||||| |||||||||| |||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
38045041 |
tcttctgctatggtttctatttct---aagagacaaaaagagaatgcaaagcaatcggaggaatctttgaggaaggtcatgtacttgagttgctggggtc |
38045137 |
T |
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| Q |
102 |
ccaattaatt |
111 |
Q |
| |
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|||||||||| |
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| T |
38045138 |
ccaattaatt |
38045147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 38019357 - 38019432
Alignment:
| Q |
34 |
acaaagagagaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaa |
109 |
Q |
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||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38019357 |
acaaaaagagaaagcaaaggaatcagaagaatctttgaggaaagtcatgtacttgagttgttggggtcctaattaa |
38019432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 38045220 - 38045298
Alignment:
| Q |
145 |
ttgaaagatattgatgtaaattatgatgaattaatgaagatagcaacctttgaatttctctcaaattcaggattattctt |
224 |
Q |
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| T |
38045220 |
ttgaaagagattaatgtaaattatgatgaattgatgaagatagcaacc-ttgaatttctctgaaattcaggattattctt |
38045298 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 38046589 - 38046647
Alignment:
| Q |
47 |
gcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa |
105 |
Q |
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|||||||||||||||||||||||||| | |||||||||||| || |||||||||||||| |
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| T |
38046589 |
gcaaagcaatcagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaa |
38046647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 38003615 - 38003680
Alignment:
| Q |
42 |
agaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
107 |
Q |
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|||||||||| || ||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38003615 |
agaaggcaaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
38003680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 38069100 - 38069155
Alignment:
| Q |
47 |
gcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcc |
102 |
Q |
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||||||| |||||||||||||||||| | |||||||||||| || ||||||||||| |
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| T |
38069100 |
gcaaagcgatcagaggaatctttgagaacagtcatgtacttaagctgttggggtcc |
38069155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 38022058 - 38022113
Alignment:
| Q |
50 |
aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa |
105 |
Q |
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||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||||| |
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| T |
38022058 |
aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
38022113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 42403936 - 42404004
Alignment:
| Q |
42 |
agaaggcaaagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaatt |
111 |
Q |
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|||| ||||| |||||||||| ||||| ||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
42403936 |
agaatgcaaaacaatcagagggatcttagagaaaagtcatgtacttcagtt-ctggggtcccaattaatt |
42404004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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