View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_1 (Length: 869)
Name: NF2696_low_1
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 19 - 859
Target Start/End: Complemental strand, 1600097 - 1599230
Alignment:
| Q |
19 |
gtaagacattattctccatagttgcattactaaataatcagttgaagattgaaatgcaacttt----------------acaagacattggatgagatgg |
102 |
Q |
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| T |
1600097 |
gtaagacattattctccatagttgcattactaaataatcagttgaagattgaaatgcaactttggtaaattacaactttacaagacattggatgagatgg |
1599998 |
T |
|
| Q |
103 |
tgaggtgatgctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcct |
202 |
Q |
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| T |
1599997 |
tgaggtgaggctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcct |
1599898 |
T |
|
| Q |
203 |
ttttcgtttcgttacttaaa-taacgttttcaatagtaaaatagtagtagtctttgttgaagtaaggtgttttgttatgtgaaagttgttaacttgttat |
301 |
Q |
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| T |
1599897 |
ttttcgtttctttacttaaaataacgttttcaatagtaaaatagtagtagtctttgttgaagtaaggtgttttgttatgtgaaagttgttaacttgttat |
1599798 |
T |
|
| Q |
302 |
gcaagatacctattgaatcctttcttgacttgaattatatatgaaggtagcttaagagtacaaaataaaaataaacaagctttagttttcattgatttgg |
401 |
Q |
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| T |
1599797 |
gcaagatacctattgaatactttcttgacttcaattatatatgaaggtagcttaagagtacaaaataaaaataaacaagatttagttttcattgaattgg |
1599698 |
T |
|
| Q |
402 |
cacacgatatattgtttactaacaaagatttttagttaaaattgaaggaatgtaagattgtgggtttgataacattttagagggattctgattg-----g |
496 |
Q |
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| T |
1599697 |
cacacgatatattgtttactaacaaagatttttagttaaaattgaaggaatgtaagattgtgggtttgataacattttagagggattctgattgggacgg |
1599598 |
T |
|
| Q |
497 |
gactttagagctttaaaacatgtctagaattccttaacttccatataccatggtttgttaaaaaacggcaatattaatgaatcattgaaattcaaacaaa |
596 |
Q |
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| T |
1599597 |
gactttagagctttaaaacatgtctaaaattccttaacttccatataccatggtttgttaaaaaacggcaatattaatgaatcattgaaattcaaacaaa |
1599498 |
T |
|
| Q |
597 |
atatatatctagttatgtgtaaggttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaatt |
696 |
Q |
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| T |
1599497 |
atatatatctagttatgtgtaaggttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaatt |
1599398 |
T |
|
| Q |
697 |
a--atataaccacaaggaaagtgtagataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtaca |
794 |
Q |
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| T |
1599397 |
aatatataaccacaaggaaagtgtagataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtaca |
1599298 |
T |
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| Q |
795 |
gttcggttttggaaaa---gataattcctattcgatttgaaaccacagaacctacattcaaccttcat |
859 |
Q |
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| T |
1599297 |
gttcggttttggaaaagatgataattcctattcgatttgaaaccacagaacctacattcaaccttcat |
1599230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 5769010 - 5769071
Alignment:
| Q |
119 |
atattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggt |
180 |
Q |
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| T |
5769010 |
atatttctggagtctaggaatggatacctgatttcttcttctgctggaaggtgtgatttggt |
5769071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 847
Target Start/End: Original strand, 41222373 - 41222434
Alignment:
| Q |
786 |
aaaagtacagttcggttttggaaaagataattcctattcgatttgaaaccacagaacctaca |
847 |
Q |
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||||||||| || || ||| ||||| ||| |||||||||| |||||||||||| |||||||| |
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| T |
41222373 |
aaaagtacaatttgggttttgaaaatatagttcctattcggtttgaaaccacataacctaca |
41222434 |
T |
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