View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_12 (Length: 551)
Name: NF2696_low_12
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 43361202 - 43360841
Alignment:
| Q |
1 |
tgaactatttaatttaacttaattctaaaaaagttacagcatattgttagctttcaaaatcatgtatgtttatgtcat--tgttaactacttcttcagtt |
98 |
Q |
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| T |
43361202 |
tgaactatttaatttaacttaattctaaaaaagttacagcatattgttagctttcaaaatcatgtatatttatgtcatattgttaactacttcttcagtt |
43361103 |
T |
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| Q |
99 |
gccaacaagtgagcaataatgcataaagcaaagatcaaatgtggtaatttccactctatgtttaactaacacaatcatggctcaaatacttcgaggtaaa |
198 |
Q |
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| T |
43361102 |
gccaacaagtgagcaataatacataaagcaaagatcaaatgtggtaatttccactctatgtttaactaacacaatcatggctcaaatacttcgaggtaaa |
43361003 |
T |
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| Q |
199 |
tcacagcttgaatatcaatacacaacaattaacactattnnnnnnntacaacatcaccttcgaaaggacatgacatgttagagtactgcaagttttcctc |
298 |
Q |
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| T |
43361002 |
tcacagcttgaatatcaatacacaacaaataacactattaaaaaaatacaacatcaccttcgaaaggacatgacatgttagagtactgcaagttttcctc |
43360903 |
T |
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| Q |
299 |
caatgacaatagtagcagctttatagaattgcatgttaaacagtaacagttagaataagata |
360 |
Q |
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| T |
43360902 |
caatgacaatagtagcagctttatagaattgcatgttaaacagtaacagttagaataagata |
43360841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 381 - 534
Target Start/End: Complemental strand, 43360844 - 43360691
Alignment:
| Q |
381 |
gatatttggccaagttcaagtgagcttgacatttacagtttttatttttcacgaaattgtttgaagaggaaacatgacagtgcaaacatgcaatataaaa |
480 |
Q |
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| T |
43360844 |
gatatttggccaagttcaagtgagcttgacatttacagcttttatttttcacgaaattgtttgaagaggaaacatgacagtgcaaacatgcaatataaaa |
43360745 |
T |
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| Q |
481 |
aatctcaagtgttagcaaaagaaatgttatcctcttgaaatttgaaactataaa |
534 |
Q |
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| T |
43360744 |
aatctcaagtgttagcaaaagaaatgttatcctcttgaaatttgaaactataaa |
43360691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 499
Target Start/End: Original strand, 49414351 - 49414504
Alignment:
| Q |
359 |
tacttgctaaaggctaacaattgatatttggccaagttcaagtgagcttgacatttacagtttttattt-ttcacgaaattgtttg------------aa |
445 |
Q |
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| T |
49414351 |
tacttgctaaaggctaaagattgatatttggctaagttcaagtgagcttgatatttatgggttttatttatttacaaaattctttgcttgacagcatcaa |
49414450 |
T |
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| Q |
446 |
gaggaaacatgacagtgcaaacatgcaatataaaaaatctcaagtgttagcaaa |
499 |
Q |
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| T |
49414451 |
gatgaaatatgacagtgcaaatgtgcaatgtaaaaaatcttaagtgttagcaaa |
49414504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 318
Target Start/End: Original strand, 49414126 - 49414301
Alignment:
| Q |
143 |
taatttccactctatgtttaactaac--aca-atcatggctcaaatacttcgaggtaaatcacagcttgaatatcaatacacaacaattaacactattnn |
239 |
Q |
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| T |
49414126 |
taatttccactctatgtcgaactaattaacacatcatgtctcaaatactttgaagtaaatcacagcttgaatatcattacacaacaa----caatattca |
49414221 |
T |
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| Q |
240 |
nnnnntacaacatcaccttcgaaaggacat--gacatgttagagtactgcaagttttcctccaatgacaatagtagcagct |
318 |
Q |
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| T |
49414222 |
atta-tacaacatcaccacctaaaggacatatgacatgttagggtactacaaactttcttccaatgacaatagtagtagct |
49414301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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