View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_15 (Length: 538)
Name: NF2696_low_15
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 26690631 - 26690127
Alignment:
| Q |
19 |
gtatgagaaaatttgcaagtatttaagttacaaaacatgtatctagcttcgattttttggctgagagagaactcagaatcaaacatacttcggaaaagta |
118 |
Q |
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| T |
26690631 |
gtatgagaaaatttgcaagtatttaagttacaaaacatgtatttagcttcgattttttggctgagagagaactcagaatcaaacatacttcggaaaagta |
26690532 |
T |
|
| Q |
119 |
acaaactatggtgacaattcacttccacttggaagctaccgttcgtcaggccacattcctactgtgactccaaacaggctatgcgtctttgtaagtagat |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690531 |
acaaactatggtgacaattcactttcacttggaagctaccgttcgtcaggccacattcctactgtgactccaaacaggctatgcgtctttgtaagtagat |
26690432 |
T |
|
| Q |
219 |
caacctgttggagattttaaggagagcttctgaacctttactcaaaccttgatatttcaggaacaattactgctaggcaaatgatgatgccttcaaacct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690431 |
caacctgttggagattttaaggagagcttctgaacctttactcaaaccttgatatttcaggaacaattactgctaggcaaatgatgatgccttcaaacct |
26690332 |
T |
|
| Q |
319 |
aagttagactaaagctgag-nnnnnnnnntgcatatattgaaaatatgttactatgattagttgattaccatgctggggaacgtctctttttgctcatgt |
417 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690331 |
aagttagactaaagctgagaaaaaaaaaatgcatatattgaaaatatgttactatgattagttgattaccatgctggggaacgtctctttttgctcatgt |
26690232 |
T |
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| Q |
418 |
gttgctgattacaacctatataatcatcagaatttggatggtatttgtatgtaggtggaaattctatagatccttcatgccaaccttggaatacatgacc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26690231 |
gttgctgattacaacctatataatcatcagaatttggatggtatttgtatgtaggtggaaattctatagatccttcatgccaaccttggaatacacgacc |
26690132 |
T |
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| Q |
518 |
ctctt |
522 |
Q |
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||||| |
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| T |
26690131 |
ctctt |
26690127 |
T |
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