View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_low_16 (Length: 536)

Name: NF2696_low_16
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_low_16
NF2696_low_16
[»] chr4 (21 HSPs)
chr4 (13-520)||(12120901-12121408)
chr4 (24-519)||(1504569-1505061)
chr4 (32-519)||(1488824-1489311)
chr4 (24-520)||(1537243-1537718)
chr4 (426-497)||(55908585-55908656)
chr4 (87-373)||(1486802-1487082)
chr4 (437-497)||(8186959-8187019)
chr4 (406-489)||(547092-547175)
chr4 (426-512)||(1600575-1600661)
chr4 (395-519)||(558647-558771)
chr4 (107-165)||(5106312-5106370)
chr4 (122-238)||(558919-559035)
chr4 (406-497)||(532354-532445)
chr4 (125-164)||(5035626-5035665)
chr4 (426-472)||(570727-570773)
chr4 (406-464)||(1548263-1548321)
chr4 (121-186)||(6007647-6007712)
chr4 (113-162)||(12118050-12118099)
chr4 (121-165)||(2486310-2486354)
chr4 (114-162)||(12115382-12115430)
chr4 (396-464)||(21834208-21834276)
[»] chr2 (5 HSPs)
chr2 (426-518)||(1037521-1037613)
chr2 (406-497)||(32785612-32785703)
chr2 (429-475)||(44575459-44575505)
chr2 (16-55)||(44575081-44575120)
chr2 (32-88)||(45244526-45244582)
[»] chr8 (4 HSPs)
chr8 (415-510)||(32151456-32151551)
chr8 (363-497)||(18315067-18315201)
chr8 (407-462)||(17627897-17627952)
chr8 (121-165)||(32152209-32152253)
[»] chr6 (7 HSPs)
chr6 (406-465)||(9411555-9411614)
chr6 (31-73)||(6427508-6427550)
chr6 (121-162)||(6395781-6395822)
chr6 (121-158)||(6427432-6427469)
chr6 (121-166)||(7993320-7993365)
chr6 (121-162)||(14821628-14821669)
chr6 (33-73)||(6433172-6433212)
[»] chr7 (2 HSPs)
chr7 (32-88)||(15091284-15091340)
chr7 (426-464)||(10614794-10614832)
[»] chr3 (4 HSPs)
chr3 (394-462)||(51764268-51764336)
chr3 (396-450)||(51113611-51113665)
chr3 (407-464)||(13470573-13470630)
chr3 (133-165)||(51112983-51113015)
[»] chr5 (6 HSPs)
chr5 (121-165)||(32268773-32268817)
chr5 (426-464)||(37938092-37938130)
chr5 (128-161)||(12846943-12846976)
chr5 (24-73)||(29022133-29022182)
chr5 (428-465)||(41901397-41901434)
chr5 (32-72)||(41886296-41886336)
[»] scaffold0295 (1 HSPs)
scaffold0295 (440-497)||(495-552)
[»] chr1 (1 HSPs)
chr1 (407-464)||(19468340-19468397)


Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 520
Target Start/End: Original strand, 12120901 - 12121408
Alignment:
Q  13 gattgcaacaacagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtct 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12120901 gattgcaacaaaagatctatatttacctgatgagtgttgggaatgtgtcatcagattcctcgacaacgacgacaaccacagcaacagctccttaaagtct 12121000  T
Q  113 ttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12121001 ttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatactcaataactatccgtcacccaacccggatttgccccagtggactcttcc 12121100  T
Q  213 aaagattccctaacctcacctccctccgcctcactcactactatggtggtgacatattttcttggctttcctccatagccttttctattagaataaaaaa 312  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12121101 aaagattccctaacctcacctctctccgcctcactcactactatggtggtgacatattttgttggctttcctccatagccttttctattagaataaaaaa 12121200  T
Q  313 cacacaaacaaataatagtgcagacaattctaattcctttgttgttagtactcaattaaagtctcttcatttgatttcgagtacatggttacaagatgaa 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12121201 cacacaaacaaataatagtgcagacaattctaattcctttgttgttagtactcaattaaagtctctccatttgatttcgagtacatggttacaagatgaa 12121300  T
Q  413 agcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaagga 512  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12121301 agcatcaaaaggattgcttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaagga 12121400  T
Q  513 catgttcc 520  Q
    ||||||||    
T  12121401 catgttcc 12121408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 24 - 519
Target Start/End: Original strand, 1504569 - 1505061
Alignment:
Q  24 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgt 123  Q
    ||||| |||||||| ||||| ||||||||||||| ||| ||||||||||| |||||| |||||| |||| |||||||||||||| |||||||||||||||    
T  1504569 cagatttatatttatctgatcagtgttgggaatgtgtcgtcagattcctcaacaacggcaacaaacacaacaacagctccttaacgtctttctctgccgt 1504668  T
Q  124 ctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccct 223  Q
    |  |||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||| |  || ||| |||| ||||||||||||||||||||    
T  1504669 cataaagcagttcctgtcgatcaccaaccgtcttcgattctcaataactatctgtgacccaacctgcctttgcctcagttgactcttccaaagattccct 1504768  T
Q  224 aacctcacctccctccgcctcactcactactatggtggtgacatattttcttggctttcctccatagccttttctattagaataaaaaacacacaaacaa 323  Q
    ||||||||||||||||||||  ||||||||| | |||  |||||||||| |||| |||||||| | ||||  || |||||  | ||| ||||    | ||    
T  1504769 aacctcacctccctccgccttgctcactacttttgtgacgacatattttgttggatttcctcccttgcctcctccattagtctgaaatacac---taaaa 1504865  T
Q  324 ataatagtgcagacaattctaattcctttgttgttagtactcaattaaagtctcttcatttgatttcgagtacatggttacaagatgaaagcatcaaaag 423  Q
     |||||||| |||||| |||||||||||||||||  |  |||||||||||||||| ||||||||||  | | |||| |||| ||||||||||||| |||     
T  1504866 ttaatagtgtagacaagtctaattcctttgttgtaggccctcaattaaagtctctccatttgatttttaatccatgtttacgagatgaaagcatccaaac 1504965  T
Q  424 gattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaaggacatgttc 519  Q
    |||||||||| |||||||||||||||||||| || |||| |||| |||| |||||| ||||||||||||||||||||| || ||||||||||||||    
T  1504966 gattgcttccgttttccccaatttgcaattggttaattttagttattgccataacatatctgaagaaggtattttccatgttttaaggacatgttc 1505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 32 - 519
Target Start/End: Original strand, 1488824 - 1489311
Alignment:
Q  32 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgtctcaaagc 131  Q
    ||||||||||||||||| |||||||| ||| ||| ||||||| || ||| | || || ||| ||  || ||||| |||||||||||||||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctcaacgacggccacgacaacaacagtagatccttgaagtctttctctgccgtctcaaagc 1488923  T
Q  132 agttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccctaacctcac 231  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||    | |||||||    | ||| |||| |||| |||||||||||||||||||||||    
T  1488924 agttcctctccatcaccaaccatcttcgattttcaataaccatcaaagaaccaacccaccgttgcctcagtcgacttttccaaagattccctaacctcac 1489023  T
Q  232 ctccctccgcctcactcactactatggtggtgacatattttcttggctttcctccatagccttttctattagaataaaaaacacacaaacaaataatagt 331  Q
    |||| || |||||||||||||||| |    ||||| ||||| |||||||||||||||||||| ||| |||| ||| ||| ||||| ||| ||| ||||||    
T  1489024 ctccatctgcctcactcactactacgacaatgacacattttgttggctttcctccatagcctcttccattaaaatgaaatacacaaaaaaaaaaaatagt 1489123  T
Q  332 gcagacaattctaattcctttgttgttagtactcaattaaagtctcttcatttgatttcgagtacatggttacaagatgaaagcatcaaaaggattgctt 431  Q
    | ||||||||||||||| || || || |   |||||||||||||||| ||||||||||||| | || |  ||| ||||||||||||  ||| |||||||     
T  1489124 gtagacaattctaattctttcgtcgtcatccctcaattaaagtctctccatttgatttcgaattcacgaatacgagatgaaagcatagaaatgattgctg 1489223  T
Q  432 ccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaaggacatgttc 519  Q
    || ||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||| || |||| |||||||||    
T  1489224 cccttttccccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattttccatgttttaaagacatgttc 1489311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 24 - 520
Target Start/End: Original strand, 1537243 - 1537718
Alignment:
Q  24 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgt 123  Q
    ||||| |||||||||||||||||||||||||||| ||  ||||||||||| |||||| | |  | | || ||||||||||||||||||||| | ||||||    
T  1537243 cagatttatatttacctgatgagtgttgggaatgtgtattcagattcctcaacaacggccatgatcgcaacaacagctccttaaagtctttatgtgccgt 1537342  T
Q  124 ctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccct 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| |  || ||| |||| ||||||||||||||||||||    
T  1537343 ctcaaagcagttcctctccatcaccaaccgtcttcaattctcaatatctatcagtgacccaaccagcctttgcctcagtcgactcttccaaagattccct 1537442  T
Q  224 aacctcacctccctccgcctcactcactactatggtggtgacatattttcttggctttcctccatagccttttctattagaataaaaaacacacaaacaa 323  Q
    ||||||||||||||| ||||||||||||||||  |||  |||               |||||| | |||| ||| |||||||| |||  |||||||        
T  1537443 aacctcacctccctctgcctcactcactactaccgtgacgac---------------tcctccctcgcctcttccattagaatgaaatgcacacaa---- 1537523  T
Q  324 ataatagtgcagacaattctaattcctttgttgttagtactcaattaaagtctcttcatttgatttcgagtacatggttacaagatgaaagcatcaaaag 423  Q
      ||||||| |||||||||||| |||||  |||| ||  |||||||||||||||| |||||||||||||||  |||||||  |||| ||||| ||||||     
T  1537524 --aatagtgtagacaattctaactccttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaat 1537621  T
Q  424 gattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaaggacatgttcc 520  Q
    |||||||||  ||||||| |||||||||||| || ||||||||| ||||| |   | |||||||||||||||||| ||||| |||||||||||||||    
T  1537622 gattgcttcagttttcccgaatttgcaattgtttaatttgagttattgctttccaatatctgaagaaggtatttttcaagttttaaggacatgttcc 1537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 426 - 497
Target Start/End: Original strand, 55908585 - 55908656
Alignment:
Q  426 ttgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattt 497  Q
    |||||||||||||||||||||||||||| ||||||||||| |  ||| |||||| |||||||||||||||||    
T  55908585 ttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtattt 55908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 373
Target Start/End: Original strand, 1486802 - 1487082
Alignment:
Q  87 accacagcaacagctccttaaagtctttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaac 186  Q
    |||||| |||||  |||||||||||| |||| |  ||||||||| |||||||||||| |||||||||||| |||||||| || || |||  |  |||||     
T  1486802 accacaacaacatgtccttaaagtctctctccgttgtctcaaaggagttcctctccaacaccaaccgtctccgattctcgatcaccatcactgtcccaaa 1486901  T
Q  187 ccggattcgccccagtggactcttccaaagattccctaacctcacctccctccgcctcactcactactatggtggtgacatattttcttggctttcctcc 286  Q
    |||  || ||| ||||  |||||| |||||||| | ||| ||||||| ||||  ||||| |||| |||| |||| |||   ||||  | || ||| ||||    
T  1486902 ccgcctttgcctcagtcaactcttgcaaagatttcataatctcacctacctcaacctcattcacaactacggtgatga---atttcgtagggttttctcc 1486998  T
Q  287 atagccttttctattagaataaaaaacacacaaacaaataatagtgcagacaattctaattcctttgttgttagtactcaattaaag 373  Q
       |||| ||| |||||||| |||  ||||||   ||||||||||| ||||||||||||||| |||||||| ||  |||||||||||    
T  1486999 cacgcctcttccattagaatgaaatgcacaca---aaataatagtgtagacaattctaattcatttgttgtaagccctcaattaaag 1487082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 8186959 - 8187019
Alignment:
Q  437 ttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattt 497  Q
    |||||||||||||| |||||||||||||||  ||||||| ||| |||||||||||||||||    
T  8186959 ttccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtattt 8187019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 489
Target Start/End: Complemental strand, 547175 - 547092
Alignment:
Q  406 agatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaaga 489  Q
    ||||||||||||||||| | || ||||||| ||||||||||||||| |||||||||| |||| |||   ||||| |||||||||    
T  547175 agatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaaga 547092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 1600661 - 1600575
Alignment:
Q  426 ttgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaagga 512  Q
    ||||||||| ||| |||||||||||| |||||||||||||   ||||  ||||| |||||||||||||||||  ||||| |||||||    
T  1600661 ttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaagga 1600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 519
Target Start/End: Complemental strand, 558771 - 558647
Alignment:
Q  395 acatggttacaagatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggta 494  Q
    ||||||||| |||||||||   || ||| |||||||||| ||||||| |||||| |||||||||||||||  | |||  |||| | ||| ||| ||||||    
T  558771 acatggttaaaagatgaaacggtccaaacgattgcttccgttttcccgaatttgaaattgcttgatttgatctattgtcataaaatatcagaaaaaggta 558672  T
Q  495 ttttccaagtcttaaggacatgttc 519  Q
    |||  || || ||||||||||||||    
T  558671 tttgtcatgttttaaggacatgttc 558647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 5106312 - 5106370
Alignment:
Q  107 aagtctttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 165  Q
    |||||| |||||||||||||||| |||||  | |||||||||||||||| |||||||||    
T  5106312 aagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctc 5106370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 559035 - 558919
Alignment:
Q  122 gtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccg-gattcgccccagtggactcttccaaagattc 220  Q
    |||||||| |||||| |||||||||| |||||| || |||||||||| || ||| || | | |||  | |||| ||| ||||  |||||||||||| |||    
T  559035 gtctcaaaacagttcttctccatcacgaaccgttttagattctcaatcaccatcagtgatctaacaagtgatt-gcctcagtcaactcttccaaaggttc 558937  T
Q  221 cctaacctcacctccctc 238  Q
    ||||||||||||||||||    
T  558936 cctaacctcacctccctc 558919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 497
Target Start/End: Complemental strand, 532445 - 532354
Alignment:
Q  406 agatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattt 497  Q
    |||||||||||| | || | |||| ||||||||||||||||| ||  |||| || ||||| | ||| ||||||| |||| ||||||||||||    
T  532445 agatgaaagcattataatgtttgcatccattttccccaatttacatatgctggacttgagctattgttataacatatctaaagaaggtattt 532354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 5035665 - 5035626
Alignment:
Q  125 tcaaagcagttcctctccatcaccaaccgtcttcgattct 164  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  5035665 tcaaaacagtttctctccatcaccaaccgtcttcgattct 5035626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 570773 - 570727
Alignment:
Q  426 ttgcttccattttccccaatttgcaattgcttgatttgagtttttgc 472  Q
    |||||||||||||||||||||||||| | |||||||| |||| ||||    
T  570773 ttgcttccattttccccaatttgcaactacttgatttaagttattgc 570727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 464
Target Start/End: Original strand, 1548263 - 1548321
Alignment:
Q  406 agatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttga 464  Q
    |||||||| ||||||||   || |||| |||||||||||||||||| ||||||||||||    
T  1548263 agatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttga 1548321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 6007712 - 6007647
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaac 186  Q
    |||||| || ||||||||||||||||||||| |||| ||||||||  | |||||| |||| |||||    
T  6007712 cgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaac 6007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 12118050 - 12118099
Alignment:
Q  113 ttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 162  Q
    |||||||| |||||||| ||||||||||| || || ||||||||||||||    
T  12118050 ttctctgctgtctcaaaacagttcctctctatgactaaccgtcttcgatt 12118099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 2486354 - 2486310
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 165  Q
    ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  2486354 cgtctcaaaacagtttctgtccatcaccaaccgtctccgattctc 2486310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 12115382 - 12115430
Alignment:
Q  114 tctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 162  Q
    ||||||| ||||||||  |||||||||| ||||| ||||||||||||||    
T  12115382 tctctgctgtctcaaaatagttcctctctatcactaaccgtcttcgatt 12115430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 21834208 - 21834276
Alignment:
Q  396 catggttacaagatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttga 464  Q
    |||||||| | |||||||| |||| || | ||||||| |||||||||||||| ||  ||||||||||||    
T  21834208 catggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatttga 21834276  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 1037521 - 1037613
Alignment:
Q  426 ttgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaaggacatgtt 518  Q
    |||||||||||||||||||||||||||| ||||||||||| |  ||| |||||| |||||||||||||||||   |||| ||||||| |||||    
T  1037521 ttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgtt 1037613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 497
Target Start/End: Original strand, 32785612 - 32785703
Alignment:
Q  406 agatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattt 497  Q
    ||||||||||||||  | | || |||| |||||  ||||||||||| | ||||||||||| | ||||||||||| |||||||||||||||||    
T  32785612 agatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 32785703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 44575459 - 44575505
Alignment:
Q  429 cttccattttccccaatttgcaattgcttgatttgagtttttgctat 475  Q
    |||||||||| |||||||||||||| ||||||||||| |||||||||    
T  44575459 cttccatttttcccaatttgcaattacttgatttgagcttttgctat 44575505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 44575081 - 44575120
Alignment:
Q  16 tgcaacaacagatctatatttacctgatgagtgttgggaa 55  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  44575081 tgcagcaacagatttatatttacctgatgagtgttgggaa 44575120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 45244526 - 45244582
Alignment:
Q  32 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaac 88  Q
    |||||||||||||||||||||||||| ||| | | ||||||| || ||| |||||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaattcctcaacgacggcaacaac 45244582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 510
Target Start/End: Complemental strand, 32151551 - 32151456
Alignment:
Q  415 catcaaaaggattgcttccattttccccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattttccaagtcttaag 510  Q
    |||||||| | |||||||||||||||| ||||||||| ||||||||||||| | |||| |||||| |||||||||||| ||||  ||||| |||||    
T  32151551 catcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaag 32151456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 18315067 - 18315201
Alignment:
Q  363 ctcaattaaagtctcttcatttgatttcgagtacatggttacaagatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgattt 462  Q
    |||||||||||||||| | ||| | ||  | | ||||||||  ||| |||||||||||||   || |||||||||||||||||||||| |||||||||||    
T  18315067 ctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgattt 18315166  T
Q  463 gagtttttgctataacacatctgaagaaggtattt 497  Q
    ||| |  ||| |||||| | |||||||||||||||    
T  18315167 gagctactgcgataacatacctgaagaaggtattt 18315201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 462
Target Start/End: Original strand, 17627897 - 17627952
Alignment:
Q  407 gatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgattt 462  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||    
T  17627897 gatgaaaacatcaaaatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 32152253 - 32152209
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 165  Q
    |||||| || ||||||||||||||||||||| |||| ||||||||    
T  32152253 cgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 9411614 - 9411555
Alignment:
Q  406 agatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttgag 465  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  9411614 agataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 9411555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 6427550 - 6427508
Alignment:
Q  31 atatttacctgatgagtgttgggaatgcgtcatcagattcctc 73  Q
    ||||||||||||||||||||||||||| ||| || ||||||||    
T  6427550 atatttacctgatgagtgttgggaatgggtcttcggattcctc 6427508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 6395822 - 6395781
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 162  Q
    |||||| ||||||||||||||||||||||| | |||||||||    
T  6395822 cgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 6427469 - 6427432
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttc 158  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  6427469 cgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 7993320 - 7993365
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctca 166  Q
    |||||| || ||||||||||||||||||| |||||| |||||||||    
T  7993320 cgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 14821669 - 14821628
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 162  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  14821669 cgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  33 atttacctgatgagtgttgggaatgcgtcatcagattcctc 73  Q
    ||||||||||||| |||||||||||| || |||||||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 15091284 - 15091340
Alignment:
Q  32 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaac 88  Q
    |||||||| ||||||||||||||||||||| |||||||| ||  |||||||||||||    
T  15091284 tatttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgacaacaac 15091340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 10614832 - 10614794
Alignment:
Q  426 ttgcttccattttccccaatttgcaattgcttgatttga 464  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  10614832 ttgcttccaatttccccaatttgcaactgcttgatttga 10614794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 51764268 - 51764336
Alignment:
Q  394 tacatggttacaagatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgattt 462  Q
    ||||||||||   ||||||||||||| || | |||||||||||||||||||||||||  ||||||||||    
T  51764268 tacatggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattt 51764336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 51113611 - 51113665
Alignment:
Q  396 catggttacaagatgaaagcatcaaaaggattgcttccattttccccaatttgca 450  Q
    ||||||||  |||||| ||||||| || |||||||||||||||||||||| ||||    
T  51113611 catggttaagagatgagagcatcataatgattgcttccattttccccaatctgca 51113665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 13470573 - 13470630
Alignment:
Q  407 gatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttga 464  Q
    |||||| |||||| || | ||||||||| |||||||||||||||  ||||||||||||    
T  13470573 gatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgcttgatttga 13470630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 51112983 - 51113015
Alignment:
Q  133 gttcctctccatcaccaaccgtcttcgattctc 165  Q
    |||||||||||||||||||||||| ||||||||    
T  51112983 gttcctctccatcaccaaccgtctccgattctc 51113015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 32268817 - 32268773
Alignment:
Q  121 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 165  Q
    |||||| || ||||| |||||||||||||||||||||||||||||    
T  32268817 cgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 37938130 - 37938092
Alignment:
Q  426 ttgcttccattttccccaatttgcaattgcttgatttga 464  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  37938130 ttgcttccattttccccaatctgcaatttcttgatttga 37938092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 12846976 - 12846943
Alignment:
Q  128 aagcagttcctctccatcaccaaccgtcttcgat 161  Q
    ||||||||||||||||||||||||||||| ||||    
T  12846976 aagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 29022182 - 29022133
Alignment:
Q  24 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctc 73  Q
    ||||||| ||||||||||| ||||||||||||||| || ||| |||||||    
T  29022182 cagatctttatttacctgacgagtgttgggaatgcatcttcaaattcctc 29022133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 41901397 - 41901434
Alignment:
Q  428 gcttccattttccccaatttgcaattgcttgatttgag 465  Q
    |||||||||||||||||||||||  |||||||||||||    
T  41901397 gcttccattttccccaatttgcagctgcttgatttgag 41901434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  32 tatttacctgatgagtgttgggaatgcgtcatcagattcct 72  Q
    |||||||||||||||||||||||||| ||| ||| ||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 495 - 552
Alignment:
Q  440 cccaatttgcaattgcttgatttgagtttttgctataacacatctgaagaaggtattt 497  Q
    |||||||| ||||| ||||||||||| |  ||| |||||| |||||||||||||||||    
T  495 cccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtattt 552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 19468340 - 19468397
Alignment:
Q  407 gatgaaagcatcaaaaggattgcttccattttccccaatttgcaattgcttgatttga 464  Q
    ||||||| ||||| || | ||||||||||||| |||||||||||  ||||||||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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