View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_18 (Length: 466)
Name: NF2696_low_18
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 26102500 - 26102903
Alignment:
| Q |
1 |
aatctaaatattatgacacctttgataattcgttatcacataactgcattataaaatccacgactagactgaaagctattattacataattcatgtctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
26102500 |
aatctaaatattatgacacctttgataattcgttatcacataactgcattataaaatccacgactagattgaaagctattatcacataattcatgtctat |
26102599 |
T |
|
| Q |
101 |
aaaatttgatattaatcagataccatttgatatattaataagatacataaaaatttgtgtgtttgatagcagttcataggacgttaattttgatagaact |
200 |
Q |
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||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |
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| T |
26102600 |
aaaatttgacattaatcggataccatttgatatattaacaagatacataaaaatttgtg--tttgatagcagtttataggatgttaattttgatagaact |
26102697 |
T |
|
| Q |
201 |
cgttggcatataaaataatatctgattatcgtcaaaatttgtagacataattcaaattcacattggccacaaactctgtatatagggtatggttcccaat |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
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| T |
26102698 |
cgttggcatataaaataatatatgattatcgtcaaaatttgtagacataattcaaattgacattggccacaaactctgtatataggttatggtctgcaat |
26102797 |
T |
|
| Q |
301 |
atacagaacaaaccgcatgcatgatgccttttctctcattctgaagagtagtgtataagacttttgaatttagattaagaaaaccacaggctaatggttg |
400 |
Q |
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| T |
26102798 |
atacagaacaaaccgcatgcatgttgccttttctctcattctgaagagtagtgtataggacttttgaatttagattaagaaaaccacaggctaatggttg |
26102897 |
T |
|
| Q |
401 |
ttcatc |
406 |
Q |
| |
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|||||| |
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| T |
26102898 |
ttcatc |
26102903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 26102902 - 26102935
Alignment:
| Q |
426 |
tcccaccgtccatccctttagatatgatgatgtc |
459 |
Q |
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| T |
26102902 |
tcccaccgtccatccctttagatatgatgatgtc |
26102935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 43263802 - 43263879
Alignment:
| Q |
171 |
agttcataggacgttaattttgatagaactcgttggcatataaaataatatctgattatcgtcaaaatttgtagacat |
248 |
Q |
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| T |
43263802 |
agttcataagacgttaattttgatttatctcattgccatatcaaataatatatgattaatgtcatattttgtagacat |
43263879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 19527002 - 19527190
Alignment:
| Q |
6 |
aaatattatgacacctttgataattcgttatcacataactgcattataaaatccacgactagactgaaagctattattacataattcatgtctataaaat |
105 |
Q |
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||||| |||||||||| |||||||| ||| ||||||| ||||||| ||||||||| | || ||||||||||||| ||||| ||||||| | ||||| |
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| T |
19527002 |
aaataatatgacacctccgataattctttaccacataattgcattacaaaatccaccgttggattgaaagctattatcacatagatcatgtcaacaaaat |
19527101 |
T |
|
| Q |
106 |
ttgatattaatcagataccatttgatatattaataagatacataaaaatttgtgtgtttgatagcagttcataggacgttaattttgat |
194 |
Q |
| |
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|||| ||||||||||||| || |||||| |||| | ||||||||||||| | | |||||| |||||||| |||||||||||||| |
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| T |
19527102 |
ttgacattaatcagatacaatatgatatgttaacgacatacataaaaattaacgcgcttgataaaagttcataaaacgttaattttgat |
19527190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 1682561 - 1682681
Alignment:
| Q |
12 |
tatgacacctttgataattcgttatcacataactgcattataaaatccacgactagactgaaagctattattacataattcatgtctataaaatttgata |
111 |
Q |
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||||||| ||| ||||||| ||||||||||| ||||||| ||||| ||| | || ||||||||||||| ||||| ||||||||| ||||||| || |
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| T |
1682561 |
tatgacattttttataattctttatcacataattgcatta-aaaattcaccgtttgattgaaagctattatcacatagatcatgtctacaaaatttaatg |
1682659 |
T |
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| Q |
112 |
ttaatcagataccatttgatat |
133 |
Q |
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||||| ||||||||||||||| |
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| T |
1682660 |
ttaattggataccatttgatat |
1682681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 1682812 - 1682750
Alignment:
| Q |
76 |
ctattattacataattcatgtctataaaatttgatattaatcagataccatttgatatattaa |
138 |
Q |
| |
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||||||||| |||| ||||| || |||||||||| || |||||||| ||||||||||||||| |
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| T |
1682812 |
ctattattaaataaatcatgcttacaaaatttgatgttgatcagatatcatttgatatattaa |
1682750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 34835284 - 34835345
Alignment:
| Q |
70 |
tgaaagctattattacataattcatgtctataaaatttgatattaatcagataccatttgat |
131 |
Q |
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|||||||||| || ||||| || ||| |||||||||||||||||||| |||| |||||||| |
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| T |
34835284 |
tgaaagctatcatcacatagatcttgtttataaaatttgatattaatcggatatcatttgat |
34835345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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