View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_low_23 (Length: 452)

Name: NF2696_low_23
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_low_23
NF2696_low_23
[»] chr5 (2 HSPs)
chr5 (18-452)||(4174034-4174490)
chr5 (144-452)||(4170187-4170492)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 4174034 - 4174490
Alignment:
Q  18 atatttataatgaaattgagactattacaaataatgttgatgcatttaatnnnnnnnttaactcaaatgaattatttcaaacataaaaacaactat---- 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||        
T  4174034 atatttataatgaaattgagactattacaaataatgctgatgcatttaataaaaaaattaactcaaatgaattatttcaaacataaaaacaactatgtat 4174133  T
Q  114 ------------------acccttaactatttttcctgactctgtccttgacaatattgtttttaacataacacaccagtgggttctccgactgcgaaat 195  Q
                      ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  4174134 atgtgtaaaattttcgccacccttaactatttttcctgactctgtccctgacaatattgtttctaacataacacaccagtgggttgtccgactgcgaaat 4174233  T
Q  196 cgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4174234 cgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatca 4174333  T
Q  296 gagttgatggttgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccactatttggagtcattgggtgccaagcgt 395  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4174334 gagttaatggctgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgt 4174433  T
Q  396 ctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagcc 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4174434 ctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagcc 4174490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 144 - 452
Target Start/End: Original strand, 4170187 - 4170492
Alignment:
Q  144 tgacaatattgtttttaacataacacaccagtgggttctccgactgcgaaatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaacca 243  Q
    |||||||||||||  ||||| |||||||||| ||||| ||| ||||| ||  |||||||||||| |||||| |||||||||||||||||||||||  |||    
T  4170187 tgacaatattgttcctaacagaacacaccagcgggttatcccactgcaaagccgaacccacaagatttgcccgtatggttagtggaaatatgcgcggcca 4170286  T
Q  244 tctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctct 343  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   |||||| |  || | |||||||||||||||||||||||| |||||||||||     
T  4170287 tctttcattgccatatgatctaaaagcgtcttcgatagaagagtc---atcagaatcaattgctgcagcaagctttttagcaagaaccactgcatcctca 4170383  T
Q  344 agagcacaacatgctccttgcccactatttggagtcattgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatg 443  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||||||||| |  |||    
T  4170384 agagcacaacaagctccttgcccaagatttggagtcattgggtgccaagcatcaccaacgagtacaactctacctgcagaaacaggtggacttgttgatg 4170483  T
Q  444 gccaaagcc 452  Q
    |||||||||    
T  4170484 gccaaagcc 4170492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University