View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_low_24 (Length: 447)
Name: NF2696_low_24
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_24 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 24564164 - 24563734
Alignment:
| Q |
1 |
ttcttgctttgccatagagcgaatggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacatcttacttcctttannnnn |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
24564164 |
ttcttgctttgcaatagagcgattggaagatgatgaaaatgatttttaacggtgatcacacataaatgatgatgagatacatcttacttcctttattttt |
24564065 |
T |
|
| Q |
101 |
nnnnnnnnnnaaagtgaaaaaatgatgtaatttatattgggtttcaatcttttatttctttctttttcttcgtatttcagtgagtaaaggggaaaactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564064 |
tcctttttttaaagtgaaaaaatgatgtaatttatattgggtttcaatcttttatttctttctttttcttcgtatttcagtgagtaaaggggaaaactaa |
24563965 |
T |
|
| Q |
201 |
tagagatggaaaaatcactttattttggggtgagcaagtaacctttttcactaaatcttattataagtgaagtgaaatgagagaatgattggaattaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24563964 |
tagagatggaaaaatcactttattttggggtgagcaagtaacctttttcactaaatcttattataagtgaagtgaaatgagagaatgattggaattaatg |
24563865 |
T |
|
| Q |
301 |
atttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggtttcttaattacggatgtag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24563864 |
atttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggtttcttaattacggatgtag |
24563765 |
T |
|
| Q |
401 |
tttgagatttttaatgatacactattaatag |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24563764 |
tttgagatttttaatgatacactattaatag |
24563734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 45535593 - 45536017
Alignment:
| Q |
18 |
agcgaatggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacatcttacttcctttannnnnnnnnnnnnnnaaagtga |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| || ||| ||| |
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|
| T |
45535593 |
agcgattggaagatggtgaaaatgatttttaacg-tgaacacacataaatgatggtgagatacgtcttacttccattctttttccctttttttaaattga |
45535691 |
T |
|
| Q |
118 |
aaaaatgatgta--atttatattgggtttcaatcttttatttctttctttttcttcgtatttcagtgagtaaaggggaaaactaatagaga--tggaaaa |
213 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||| ||||||| |
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|
| T |
45535692 |
aaaattgatgtataatttatattaggtttcaatcttttatttctttctttttcttcattttttagagagtaaaggggaaaactaatagagagatggaaaa |
45535791 |
T |
|
| Q |
214 |
atcactttattttggggtgagcaagtaaccttt-----ttcactaaatcttattataagtg--aagtgaaatgagagaatgattggaattaatgatttca |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
45535792 |
atcactttattttgaggtgagcaagtaacctttcctttttcactaaatcgtattataagtgtgaattgaaatgagagaatgattggaattaatgatttca |
45535891 |
T |
|
| Q |
307 |
acgggcatacagggatttacgtgagtctagaaattaa----agcagttgcgaacttatctaaaccatt-gttggtttggtttcttaattacggatgtagt |
401 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||| | || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
45535892 |
acgggtatacaaggatttacatgagtctagaaattaattaaaacacttgggaacttatctaaaccatttgttggtttggtttctgaattacggatgtagg |
45535991 |
T |
|
| Q |
402 |
ttgagatttttaatgatacactatta |
427 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
45535992 |
tcgaaatttttaatgatacactatta |
45536017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 44337963 - 44337799
Alignment:
| Q |
24 |
tggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacatcttacttcctttannnnnnnnnnnnnnnaaagtgaaaaaat |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||| || ||| || | |||||||||| |
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|
| T |
44337963 |
tggaagatggtgaaaatgatttctaacgatgatcatacataaattatggtgagatacatctgacctccatt---ctttatttttttaagtgtgaaaaaat |
44337867 |
T |
|
| Q |
124 |
gatgtaatttatattgggtttcaatcttttatttctttctttttcttcgtatttcagtgagtaaaggg |
191 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| | |||||| |||||||||| |
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|
| T |
44337866 |
gatgtaatttatattggtattcaatcttttatttcattctttttcttcatttttcagagagtaaaggg |
44337799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 44337779 - 44337724
Alignment:
| Q |
328 |
tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttggttt |
383 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
44337779 |
tgagtctagaagttaaaacacttgggaacttatctaaaccattgttagtttggttt |
44337724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 2 - 427
Target Start/End: Complemental strand, 9799073 - 9798646
Alignment:
| Q |
2 |
tcttgctttgccata-gagcgaatggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacat-----cttacttccttta |
95 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| ||| |
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|
| T |
9799073 |
tcttgctttgcaatatgagcgaccggaagatggtgaaaaggatctttaacggtaatcacacataaatgatggtaagatacattacatcttacttccatta |
9798974 |
T |
|
| Q |
96 |
nnnnnnnnnnnnnnnaaagtgaaaaaatgatgtaatttatattgggtttcaatcttttatttctttctttttcttcgtatttcagtgagtaaaggggaaa |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||| || || |||||| |||||| |
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|
| T |
9798973 |
ttttttcctttttttaaagtgaaaaaataatgtaatttatattgggtttcaatctttt-------tcttttt-------ttgaagggagtaacagggaaa |
9798888 |
T |
|
| Q |
196 |
actaatag--agatggaaaaatcactttattttggggtgagcaagtaacct--------------ttttcactaaatcttattataagtgaagtgaaatg |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||||||||||||||||||| |
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|
| T |
9798887 |
actaatagtgagatggaaaaatcactttattatggggcgagcaagtaaactcttctattatttccttttcactaaatcgtattataagtgaagtgaaatg |
9798788 |
T |
|
| Q |
280 |
agagaatgattggaattaatgatttcaacgggcatacagggatttacg--tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtt |
377 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| |||| || ||| |||||||||||||||||||||| || |
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|
| T |
9798787 |
agagaatgatagaaattaatgatttcaaa--------agggatttacgaatgaatctagaaactaaaacacttgggaacttatctaaaccattgttgatt |
9798696 |
T |
|
| Q |
378 |
tggtttcttaattacggatgtagtttgagatttttaatgatacactatta |
427 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9798695 |
tggtttcttaattacggatgtagttcgagatttttaatgatacactatta |
9798646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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