View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_31 (Length: 398)
Name: NF2696_low_31
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 16699477 - 16699823
Alignment:
| Q |
1 |
atgtaaacattaatctttactaaattacacttacctttcttttattttgtaaaatatagnnnnnnnn-----tggagggtatatgtggcatttaagcata |
95 |
Q |
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| T |
16699477 |
atgtaaacattaatctttactaaattacacttacctttcttttattttgtaaaatatagaaagaaaaaaaaatggagggtatatgtggcatttaagcata |
16699576 |
T |
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| Q |
96 |
tctactatgtatgagtcgtatcatatattcataaattaaaattcttggttactaaacaaattaataaaaattgaaatgatatcaatcaaaaacttatcat |
195 |
Q |
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| T |
16699577 |
tctactatgtatgagtcgtatcatatattcataaattaaaattcttggttactaaacaaattaataaaaattgaaatgatatcaatcaaaaacttatcat |
16699676 |
T |
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| Q |
196 |
gtgatatagagcacacacatgctatttcctgatttgctattcttgatgtcaggaagcacaagagtggctcctaggtacctagctacaaccactgcatctg |
295 |
Q |
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| T |
16699677 |
gtgatatagagcacacacatgctatttcctgatttgctattcttgatgtcaggaagcacaagagtggctcctaggtacctagctacaaccactgcatctg |
16699776 |
T |
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| Q |
296 |
caatctgtgcaaatcatttcaataaatggtaaaatgaaggagcaata |
342 |
Q |
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| T |
16699777 |
caatctgtgcaaatcatttcaagaaatggtaaaatgaaggagcaata |
16699823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 16699822 - 16699850
Alignment:
| Q |
353 |
taataatggaaaaactcaaattagaaact |
381 |
Q |
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| T |
16699822 |
taataatggaaaaactcaaattagaaact |
16699850 |
T |
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