View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_36 (Length: 375)
Name: NF2696_low_36
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 24564234 - 24564579
Alignment:
| Q |
18 |
tttctgaaagcaatagtaaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgaagtctagaaaggcc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
24564234 |
tttctgaaagcaatagtaaattacttcaacgtgactttgttacaacaaaaaaa-tcaatgtgattaagacatgaaatgatcgttgcagtttagaaaggcc |
24564332 |
T |
|
| Q |
118 |
atatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24564333 |
atatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattggcat |
24564432 |
T |
|
| Q |
218 |
gtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatct |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
24564433 |
gtataaagcatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatgtaatcacatgtatctatattt |
24564532 |
T |
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| Q |
318 |
tgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
365 |
Q |
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||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
24564533 |
tgtaggcgacgaatacgggaacgtatcagacacc-aaacacgcctatg |
24564579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 82 - 365
Target Start/End: Original strand, 9800524 - 9800805
Alignment:
| Q |
82 |
taagacatgaaatgatcattgaagtctagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg |
181 |
Q |
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|||| |||| ||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
9800524 |
taagccatgtaatgatcattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatg |
9800623 |
T |
|
| Q |
182 |
aatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaa |
281 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
9800624 |
aatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaa |
9800722 |
T |
|
| Q |
282 |
taatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
365 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| ||| | ||||| ||||||||||||| |
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| T |
9800723 |
taatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatg |
9800805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9799146 - 9799190
Alignment:
| Q |
18 |
tttctgaaagcaatagtaaattacttcaacgtgactttgttacaa |
62 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
9799146 |
tttctgaaagcaacagtaaattaaatcaacgtgactttgttacaa |
9799190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 45535230 - 45534957
Alignment:
| Q |
19 |
ttctgaaagcaatagtaaattacttcaacgtgactttgttacaacnnnnnnnn-tcaatgtgattaagacatgaaatgatcattgaagtctagaaaggcc |
117 |
Q |
| |
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||||||||| |||||| ||||| |||| |||||||||||||||| |||||| |||||||| ||| ||||||||||| ||| ||||||||| |
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| T |
45535230 |
ttctgaaagtaatagttaattaaatcaatgtgactttgttacaacaaaaaaaaatcaatgcgattaagagatgtaatgatcattgcagttgagaaaggcc |
45535131 |
T |
|
| Q |
118 |
atatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcat |
217 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||| ||||| ||| ||||||||||| |
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| T |
45535130 |
atacggccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagcat |
45535031 |
T |
|
| Q |
218 |
gtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
291 |
Q |
| |
|
|||||||| | | ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |
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|
| T |
45535030 |
gtataaagcaacaacatatacatagagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 74 - 316
Target Start/End: Original strand, 44338329 - 44338572
Alignment:
| Q |
74 |
aatgtgattaagacatgaaatgatcattgaagtctagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagtt |
173 |
Q |
| |
|
|||||||| |||| ||| |||||||| || ||| |||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
44338329 |
aatgtgatcaagagatgtaatgatcactgcagttcagaaaggccatatggctccttaaattagttgactaatttaaaggtatatttgcgcacaccaagtt |
44338428 |
T |
|
| Q |
174 |
actcaatg-aatatggtttgg-aatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaatta |
271 |
Q |
| |
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| |||||| || |||||| || ||||| ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| |||||| |||||||| |
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| T |
44338429 |
agtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgacatatacccagagacattaacatgtgaacaaagacaatta |
44338528 |
T |
|
| Q |
272 |
ttttaaaaaataatataattcaatataatcacatgtatctatatc |
316 |
Q |
| |
|
||| | |||||| | |||| |||||||||| ||||||||||||| |
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| T |
44338529 |
-tttgagaaataacacaattaaatataatcatatgtatctatatc |
44338572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
274 |
ttaaaaaataatataattcaatataatcacatgtatc |
310 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
258 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
307 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
271 |
attttaaaaaataatataattcaatataatcacatgtatct |
311 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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