View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_low_41 (Length: 357)
Name: NF2696_low_41
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_41 |
 |  |
|
| [»] scaffold0084 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 13277984 - 13278072
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13277984 |
gatggttatggtggagtgattagagggtgttgctcatgatagataaagatgacaatgatggtggtgtagttattaaatagtaggtttaa |
13278072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 13277800 - 13277887
Alignment:
| Q |
33 |
aacacttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactccggtatgtataacgaaatgatgatga |
128 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
13277800 |
aacacttgtttgattcaattcaatcactatt--------gttttcggtaattgttgatttttgtatactccactgtgtataacgaaatgatgatga |
13277887 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 19229841 - 19229900
Alignment:
| Q |
244 |
ttggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
|||||| |||||| |||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
19229841 |
ttggagtgtgttgatgatgataaatgaagatgacaatgatggtggtgtagtgattaaata |
19229900 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 18091954 - 18091866
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
18091954 |
gatggttatggtggagtgattggagggtgttgatgatgatagatgaagatgtcaatgatggtggtgtagtgattaaatagtaggtttaa |
18091866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 48081114 - 48081205
Alignment:
| Q |
37 |
cttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactccggtatgtataacgaaatgatgatga |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
48081114 |
cttgtttgattcaattcaatcaccgttaaaagattgttttctgtaattgttgattcttgtatactccactgtgtataacaaaatgatgatga |
48081205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 34095431 - 34095500
Alignment:
| Q |
244 |
ttggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||| |||||||||| || ||||||||| ||||| |
|
|
| T |
34095431 |
ttggagggtggtgatgatgatagatgaagatgacaatgatagtggtgtagtgatgaaatagtaggtttaa |
34095500 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 38032188 - 38032247
Alignment:
| Q |
244 |
ttggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
|||||| |||||| |||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
38032188 |
ttggagtgtgttgatgatgataaatgaagatgacaatgatggtggtgtagtgattaaata |
38032247 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 10803225 - 10803180
Alignment:
| Q |
262 |
gatagataaagatgacaatgatggtggtgtagttattaaatagtag |
307 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
10803225 |
gatagatgaagatgacaatgatggtgatgtagtgattaaacagtag |
10803180 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 2293201 - 2293245
Alignment:
| Q |
247 |
gagggtgttgctgatgatagataaagatgacaatgatggtggtgt |
291 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
2293201 |
gagggtgtttatgatgatagatgaagatgacaatgatggttgtgt |
2293245 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 47430933 - 47431021
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
47430933 |
gatggttatggtggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgatgaaatagtaggtttaa |
47431021 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 50880236 - 50880145
Alignment:
| Q |
37 |
cttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactccggtatgtataacgaaatgatgatga |
128 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
50880236 |
cttgtttgattcaattcaatcactgttaaaagattgttttatgtaattgttgattcttgtatactccactgtgtataacgaaatgatgatga |
50880145 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 50880059 - 50879972
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagattta |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
50880059 |
gatggttatggtggagtgagtggagggtgttcatgatgatagatgaagatgacaatgatattggtgtagtgattaaatagtaggttta |
50879972 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 21728272 - 21728185
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagattta |
312 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| | |||||||||| |||| |
|
|
| T |
21728272 |
gatgattatgatggagtgattgcagggtgttgatgatgatagatgaagatgataatgatggtggtgtagtgactaaatagtaggttta |
21728185 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 28776794 - 28776735
Alignment:
| Q |
244 |
ttggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
28776794 |
ttggagtgtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgattaaata |
28776735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 37610538 - 37610605
Alignment:
| Q |
246 |
ggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| |||||| || ||||||||| ||||| |
|
|
| T |
37610538 |
ggagggtgttgatgatgatagatgaagatgactatgatggtattgtagtgatcaaatagtaggtttaa |
37610605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 39133448 - 39133395
Alignment:
| Q |
260 |
atgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
||||||||| |||||||| |||||||| |||| || |||||||||||||||||| |
|
|
| T |
39133448 |
atgatagatgaagatgacgatgatggttgtgtggtgattaaatagtagatttaa |
39133395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 11348273 - 11348315
Alignment:
| Q |
270 |
aagatgacaatgatggtggtgtagttattaaatagtagattta |
312 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11348273 |
aagaagacaatgatggtggtgtagtgattaaatagtaggttta |
11348315 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 55210101 - 55210059
Alignment:
| Q |
270 |
aagatgacaatgatggtggtgtagttattaaatagtagattta |
312 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
55210101 |
aagatgacaaagatggtggtgtagtgattaaatagtaggttta |
55210059 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 52759737 - 52759649
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
52759737 |
gatggttatggtggagtgattggagggtgttgatgatgatagatgaagatgtcaatgatggtggtgtagtgattaaatagtaggtttaa |
52759649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 17244531 - 17244470
Alignment:
| Q |
246 |
ggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtag |
307 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
17244531 |
ggagggtgttgatgatgatagatgaagatgacaatgatggtgatgtagtgattaaatagtag |
17244470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 7111247 - 7111306
Alignment:
| Q |
244 |
ttggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
7111247 |
ttggagtgtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgattaaata |
7111306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 36808393 - 36808328
Alignment:
| Q |
38 |
ttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactcc |
103 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
36808393 |
ttgtttgattcaattcaatcactcttgaaagattgttctgtgtaattgttgattcttgtatactcc |
36808328 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 51468673 - 51468726
Alignment:
| Q |
250 |
ggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
51468673 |
ggtgttgatgatgatagatgaagatgacaatgatgatggtgtagtgattaaata |
51468726 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 51218647 - 51218692
Alignment:
| Q |
246 |
ggagggtgttgctgatgatagataaagatgacaatgatggtggtgt |
291 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||| |||| |
|
|
| T |
51218647 |
ggagggtgttgatgctgatagatgaagatgacaatgatggttgtgt |
51218692 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 43114831 - 43114920
Alignment:
| Q |
225 |
gatggttatggtgg-agtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
43114831 |
gatggttatggtgggagtgattggagggtgttgatgatgatagataaagatgataatgatggtggtgtagtgattaaatagtaggtttaa |
43114920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 9392554 - 9392638
Alignment:
| Q |
229 |
gttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
9392554 |
gttatggtgaggtgattggagggtgttgatgatgatagatgaagatgacaatgatgatggtgtagtgattaaatagtaggtttaa |
9392638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 29187028 - 29186959
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagt |
294 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29187028 |
gatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgaaaatgatggtggtgtagt |
29186959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 12630934 - 12630841
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatg------acaatgatggtggtgtagttattaaatagtagattta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
12630934 |
gatggttatggtggagtgattggagggtgttgatgatgatagatgtagatgtagttaacaatgatgatggtgtagtgattaaatagtaggttta |
12630841 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 13599036 - 13599102
Alignment:
| Q |
247 |
gagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
13599036 |
gagggtgttgatgatgatagatgaagttgacaatgatggtggtgtagtaattaaatagtaggtttaa |
13599102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 37236140 - 37236079
Alignment:
| Q |
246 |
ggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtag |
307 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
37236140 |
ggagggtgttgatgatgatagatgaagatgacaatgatggtgatgtagtgattaaatagtag |
37236079 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 35314930 - 35314993
Alignment:
| Q |
250 |
ggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||| |||| || |||||||||||| ||||| |
|
|
| T |
35314930 |
ggtgttgatgattatagatgaagatgacaatgatggttgtgtggtgattaaatagtaggtttaa |
35314993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 9244429 - 9244360
Alignment:
| Q |
225 |
gatggttatggtggagtgattggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagt |
294 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9244429 |
gatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgaaaatgatggtggtgtagt |
9244360 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 39325519 - 39325572
Alignment:
| Q |
248 |
agggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaa |
301 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||| || |||||| |
|
|
| T |
39325519 |
agggtgttgatgatgatagatgaagatgacaatgatggttgtgtggtgattaaa |
39325572 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 44102970 - 44103010
Alignment:
| Q |
246 |
ggagggtgttgctgatgatagataaagatgacaatgatggt |
286 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
44102970 |
ggagggtgttgatgatgatagatgaagatgacaatgatggt |
44103010 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 34643754 - 34643796
Alignment:
| Q |
271 |
agatgacaatgatggtggtgtagttattaaatagtagatttaa |
313 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
34643754 |
agatgacaatgatggtggtgtaatgattaaatagtaggtttaa |
34643796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 11801114 - 11801173
Alignment:
| Q |
244 |
ttggagggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
|||||| |||||| |||| |||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
11801114 |
ttggagtgtgttgatgattatagatgaagatgacaatgatggtggtgtagtaattaaata |
11801173 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 32348144 - 32348099
Alignment:
| Q |
258 |
tgatgatagataaagatgacaatgatggtggtgtagttattaaata |
303 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
32348144 |
tgatgataaatgaagatgacaatgatggtggtgtagtgattaaata |
32348099 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 14715099 - 14715059
Alignment:
| Q |
246 |
ggagggtgttgctgatgatagataaagatgacaatgatggt |
286 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14715099 |
ggagggtgttgatgatgatagataaagatgacaatgatggt |
14715059 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 12870 - 12923
Alignment:
| Q |
248 |
agggtgttgctgatgatagataaagatgacaatgatggtggtgtagttattaaa |
301 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
12870 |
agggtgttgataatgatagatgaagatgacaatgatggttgtgtagtgattaaa |
12923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University