View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_44 (Length: 344)
Name: NF2696_low_44
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 43712666 - 43712976
Alignment:
| Q |
19 |
ctacttacaagttcttgaatttgtatttaactagtagtaattgatgcataaacaaaaagtctcttcctagggtaagggtactactattactactaagatc |
118 |
Q |
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| T |
43712666 |
ctacttacaagttcttgaatttgtatttaactagtagcaattgatgcataaacaaaaagtctcttcctagggtaagggtactactattactactaagatc |
43712765 |
T |
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| Q |
119 |
gtccaacactgatgtgatggcattttaggattcgaccccactacagcaatgctacctgagcaaattataacctgctgttgcatcaaattttccctttcat |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43712766 |
gtcccacactgatgtgatggcattttaggattcgaccccactacagcaatgctacctaagcaaattataacctgctgttgcatcaaattttccctttccc |
43712865 |
T |
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| Q |
219 |
ctggctttcatcattcatgataaaatggtacattttcnnnnnnnnnnnnnnnaaattaaagttaattttgatattttggaccctttcttttctcttttat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43712866 |
ttggctttcatcattcatgataaaatggtacattttc----agagagagaaaaaattaaagttaattttgatattttggaccctttcttttctcttttat |
43712961 |
T |
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| Q |
319 |
caattcacctttcat |
333 |
Q |
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||||||||||||||| |
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| T |
43712962 |
caattcacctttcat |
43712976 |
T |
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