View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_46 (Length: 329)
Name: NF2696_low_46
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 42313817 - 42314116
Alignment:
| Q |
18 |
taagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313817 |
taagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgc |
42313916 |
T |
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| Q |
118 |
agatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctcttggtatgaagactcataacctttttacagattcaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313917 |
agatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctcttggtatgaagactcataacctttttacagattcaata |
42314016 |
T |
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| Q |
218 |
tctacaggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattctggtccttattttggaactgtttcgaacgtggcacctt |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42314017 |
tctataggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattctggtccttattttggaactgtttcgaacgtggcacctt |
42314116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 23040693 - 23040754
Alignment:
| Q |
113 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
174 |
Q |
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| T |
23040693 |
gatgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgtactttcagt |
23040754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 42734729 - 42734790
Alignment:
| Q |
113 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
174 |
Q |
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| T |
42734729 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagt |
42734790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 42762750 - 42762710
Alignment:
| Q |
128 |
gctggttttgaagctgccataagtgacggtgttgatgtgct |
168 |
Q |
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| T |
42762750 |
gctggttttgaagctgccataagtgatggtgttgatgtgct |
42762710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 42717156 - 42717095
Alignment:
| Q |
113 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
174 |
Q |
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||||||||| | || |||||||||||||||||||||||||| ||||| || ||||| ||||| |
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| T |
42717156 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagt |
42717095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 42743875 - 42743720
Alignment:
| Q |
19 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
118 |
Q |
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|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
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| T |
42743875 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
42743776 |
T |
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| Q |
119 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
174 |
Q |
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||| | || ||||||||||||||||| |||||||| ||||| || ||||| ||||| |
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| T |
42743775 |
gatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagt |
42743720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 42753234 - 42753079
Alignment:
| Q |
19 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
118 |
Q |
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|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
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| T |
42753234 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
42753135 |
T |
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| Q |
119 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
174 |
Q |
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||| | || ||||||||||||||||| |||||||| ||||| || ||||| ||||| |
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| T |
42753134 |
gatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagt |
42753079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 24266787 - 24266846
Alignment:
| Q |
38 |
aatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttgg |
97 |
Q |
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| T |
24266787 |
aatggtactgctaaaggtggatcaccaagatcacatgttgcagcctacaaagtgtgttgg |
24266846 |
T |
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