View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_48 (Length: 317)
Name: NF2696_low_48
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 49 - 299
Target Start/End: Original strand, 44523856 - 44524106
Alignment:
| Q |
49 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacact |
148 |
Q |
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| T |
44523856 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttacact |
44523955 |
T |
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| Q |
149 |
tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgtttttgataagccaacggt |
248 |
Q |
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| T |
44523956 |
tacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaacagt |
44524055 |
T |
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| Q |
249 |
aataaacatcatataaggaaatatatttatggtttgactccatgtattaag |
299 |
Q |
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| T |
44524056 |
aataaacatcatataaggaaatatacttatggtttgactccatgtattaag |
44524106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 41322300 - 41322105
Alignment:
| Q |
13 |
aatattctagttgtgccacaaaatatttgttgtaattaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatat |
112 |
Q |
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| T |
41322300 |
aatattctagttgtgccataaaatatttgttgtaattaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatat |
41322201 |
T |
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| Q |
113 |
tatgtccactgatatctctaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
208 |
Q |
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| T |
41322200 |
tatgttcactgatatctctaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
41322105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 41319115 - 41319021
Alignment:
| Q |
205 |
taagtgtcttcatggctattatttgtttttgataagccaacggtaataaacatcatataaggaaatatatttatggtttgactccatgtattaag |
299 |
Q |
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| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaag |
41319021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 37726238 - 37726150
Alignment:
| Q |
49 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagta |
137 |
Q |
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| T |
37726238 |
taatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta |
37726150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 273
Target Start/End: Original strand, 12503203 - 12503421
Alignment:
| Q |
49 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacact |
148 |
Q |
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|||||||| |||||||| |||||| ||||||||| || ||| |||||||||| ||||||||||||||||||||| || |||||| |||||||||||| |
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| T |
12503203 |
taatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttac--- |
12503299 |
T |
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| Q |
149 |
tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgtttttgataagccaacggt |
248 |
Q |
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| T |
12503300 |
---atatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacggt |
12503396 |
T |
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| Q |
249 |
aataaacatcatataaggaaatata |
273 |
Q |
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| T |
12503397 |
aataaaccatatataaggaaatata |
12503421 |
T |
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