View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_5 (Length: 635)
Name: NF2696_low_5
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 570; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 47072734 - 47072109
Alignment:
| Q |
1 |
acaaatataatatttattactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072734 |
acaaatataatatttattactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgtt |
47072635 |
T |
|
| Q |
101 |
gtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttctctcatccatccacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47072634 |
gtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttccctcatccatccacta |
47072535 |
T |
|
| Q |
201 |
ttctatagatattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacattttatttgtgttg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47072534 |
ttctatagatattacaattagagacagccaaccgttcttctctgtatagatacttgatcaacaatccttagatattaagtggtacattttatttgtgttg |
47072435 |
T |
|
| Q |
301 |
gatgcggacgaaattttaggtcgcaaatgcannnnnnncattcaaatgaactgtaaattgaagcatgaatctctgccatatgtagcatcttgattatgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072434 |
gatgcggacgaaattttaggtcgcaaatgc-gttttttcattcaaatgaactgtaaattgaagcatgaatctctgccatatgtagcatcttgattatgaa |
47072336 |
T |
|
| Q |
401 |
agttagatagtagtagtttatgctctttctatttcatgttagttagcttttagtttacattatgttatttgattcagtttccagttcatcttcctttctt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
47072335 |
agttagatagtagtagtttatgctctttctatttcatgttagttagcttttagtttacattatgttatttgattcagtttcaagttgatcttcctttctt |
47072236 |
T |
|
| Q |
501 |
ccaaaatgtatataattgatgtacccagtaccattaattattgaaagtaagaatccaatgcttcatattcataatagggtatcagttacaaataattcta |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072235 |
ccaaaatgtatataattgatgtacccagtaccattaattattgaaagtaagaatccattgcttcatattcataatagggtatcagttacaaataattcta |
47072136 |
T |
|
| Q |
601 |
cttctaccaccttcatctgttcatctc |
627 |
Q |
| |
|
|||||||||||||||||||||| |||| |
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| T |
47072135 |
cttctaccaccttcatctgttcttctc |
47072109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 210 - 586
Target Start/End: Complemental strand, 33598601 - 33598227
Alignment:
| Q |
210 |
tattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacattttatttgtgttggatgcggac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33598601 |
tattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacattttatttgtgttggatgcggac |
33598502 |
T |
|
| Q |
310 |
gaaattttaggtcgcaaatgcannnnnnncattcaaatgaactgtaaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagata |
409 |
Q |
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||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33598501 |
gaaattttaggtctcaaat--acgtttttcattcaaatgaactgtagattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagata |
33598404 |
T |
|
| Q |
410 |
gtagtagtttatgctctttctatttcatgttagttagcttttagtttacattatgttatttgattcagtttccagttcatcttcctttcttccaaaatgt |
509 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
33598403 |
gtagtagtttatgccctttctatttcatgttaattaacttttagtttacattgtgttatttgattcagtttcaagttgatcttcctttcttccaaaatgt |
33598304 |
T |
|
| Q |
510 |
atataattgatgtacccagtaccattaattattgaaagtaagaatccaatgcttcatattcataatagggtatcagt |
586 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
33598303 |
atataattgatgtacccagtaccattcattattgaaagtaagaaagcgttgcttcatattcataatagggtatcagt |
33598227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 47054599 - 47054492
Alignment:
| Q |
64 |
cattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatc |
163 |
Q |
| |
|
|||| ||||||||||| ||| ||||| |||||||||||||||||||||||||| ||| ||||| |||| |||||| |||||||| |||||||| ||||| |
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| T |
47054599 |
cattcttgtgtttttg-cagaaggacagatctctgttgtgcaagctcttttggaagaattacctgatcagtttttgtctttcatgcgaagtagaaatatc |
47054501 |
T |
|
| Q |
164 |
aaaccactt |
172 |
Q |
| |
|
||||||||| |
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|
| T |
47054500 |
aaaccactt |
47054492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 32 - 290
Target Start/End: Original strand, 18232465 - 18232721
Alignment:
| Q |
32 |
tgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttggaggaactacctaatc |
131 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
18232465 |
tgctaacaatctttactcatttaattgaaccccattattgtatttttggcaggtggacaaatctctgttgtgcaagctcttttagaggaactacctagtc |
18232564 |
T |
|
| Q |
132 |
aatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttctctcatccatccactattctatagatattacaattagagacagccaa |
231 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| ||||| || ||| ||||| || | |||||| |||||| |||||||| ||| || ||| |
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|
| T |
18232565 |
aatttctggctttcatgagaagtagagatatcaaaccactcgtttcgcatttccctcatgcacgctctattcaatagattttacaatt--agatagtcaa |
18232662 |
T |
|
| Q |
232 |
cctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacatttt |
290 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
18232663 |
ccttttttctctctatagatagttgatccacaatccttagattttaagtggtacatttt |
18232721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 18232771 - 18232908
Alignment:
| Q |
339 |
cattcaaatgaactgt--aaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttca |
436 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
18232771 |
cattcaaatgaactgtgtaaatagaaacatgaatctctgctatat------tcttgattataaatgttagatagtagtagtttatgctatttctatttca |
18232864 |
T |
|
| Q |
437 |
tgttagttagcttttagtttacattatgttatttgattcagttt |
480 |
Q |
| |
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|||| |||||||| ||||||||||| ||||| |||||||||||| |
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|
| T |
18232865 |
tgtttgttagcttctagtttacattgtgttacttgattcagttt |
18232908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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