View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_57 (Length: 292)
Name: NF2696_low_57
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 13397865 - 13398043
Alignment:
| Q |
34 |
atagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtat |
133 |
Q |
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| T |
13397865 |
atagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaagaattgaagtataacgatatttttgcaaattaatatatattgagtat |
13397964 |
T |
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| Q |
134 |
tcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattattgctaattatttatat |
212 |
Q |
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| T |
13397965 |
tcttgttctgcttctgtttagacctagtagtacatccatgttgattagggaagcaagaattattgctaattatttatat |
13398043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 20407733 - 20407882
Alignment:
| Q |
63 |
atttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagta |
162 |
Q |
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| T |
20407733 |
atttagagcttggttctttatcaagaattgaagtataaagatagttttgcgaattaatatatattgaattttcttgttccgattgtgattagacctag-- |
20407830 |
T |
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| Q |
163 |
atacatccatgttgattagggaagcaagaattattgctaattatttatatgta |
215 |
Q |
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| T |
20407831 |
-gtcatccatgttgattagggaagcaagaattattactcattatttatgtgta |
20407882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 20442357 - 20442506
Alignment:
| Q |
63 |
atttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagta |
162 |
Q |
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| T |
20442357 |
atttagagcttggttctttatcaagaattgaagtataaagatagttttgaaaattaatatatattgaatattcttgttgcgattgggtttagatctag-- |
20442454 |
T |
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| Q |
163 |
atacatccatgttgattagggaagcaagaattattgctaattatttatatgta |
215 |
Q |
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| T |
20442455 |
-tgcatccatgttgattagggaagcaagaattattactcattatttatgtgta |
20442506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 20374014 - 20373874
Alignment:
| Q |
17 |
aattttgttgctgatatatagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaat |
116 |
Q |
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| T |
20374014 |
aattttgttgctg----atagtattcacgagtgatcttattaccgcatttagagatttgttatttatcaagaattgaagtttaaagatatttctgcaaat |
20373919 |
T |
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| Q |
117 |
caatatatattgagtattcttgttctgcttgtgtttagacctagt |
161 |
Q |
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| T |
20373918 |
taatatatgttgaatattcttgttctgcttgtttttagacctagt |
20373874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 20140299 - 20140164
Alignment:
| Q |
81 |
tatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatccatgttgatta |
180 |
Q |
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| T |
20140299 |
tatcaataattgaactataaagatatttttgcaaattaatgcatattcgatattattgctctgattgtgtttagaccta---atacatccacgttgatta |
20140203 |
T |
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| Q |
181 |
gggaagcaagaattattgctaattatttatatgtatact |
219 |
Q |
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| T |
20140202 |
gggaaccaagaattattactgattatttatttctatact |
20140164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 20423360 - 20423433
Alignment:
| Q |
133 |
ttcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattattgctaattattta |
209 |
Q |
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| T |
20423360 |
ttcttgttccgattgtgtttagacatagta---catccatgttgattggggaagcaagaattattactcattattta |
20423433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 20133024 - 20132961
Alignment:
| Q |
131 |
tattcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattatt |
197 |
Q |
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| T |
20133024 |
tattattgttctgattgtgtttagacctagta---catccacgtagattagggaagcaagaattatt |
20132961 |
T |
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