View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_59 (Length: 289)
Name: NF2696_low_59
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 4174711 - 4174972
Alignment:
| Q |
13 |
gagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtgg |
112 |
Q |
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| T |
4174711 |
gagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatcctgcacgtaacccttttccatagatgtaattcacccgtag |
4174810 |
T |
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| Q |
113 |
ctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggat |
212 |
Q |
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| T |
4174811 |
ctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtaatttggctcagaaaatcccatccacttagctatcggggat |
4174910 |
T |
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| Q |
213 |
cgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagttttt |
274 |
Q |
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| T |
4174911 |
cgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagttttt |
4174972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 4170716 - 4170969
Alignment:
| Q |
13 |
gagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtgg |
112 |
Q |
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|||||||||| |||||| || ||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
4170716 |
gagatgaactgttgaagcagataaaccaatagactttggttggagaaacaggaacatatcctgcgcgtaacccttttccatagatgtaattcacccgtgg |
4170815 |
T |
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| Q |
113 |
ctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggat |
212 |
Q |
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| T |
4170816 |
ttgaaaaggttgtccgtctgaataggaggcaagtccacggaaagcacaatgaccaacgaactttggctcagaaaatcccatccacttagctatcggtgat |
4170915 |
T |
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| Q |
213 |
cgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaa |
266 |
Q |
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| T |
4170916 |
cgaattccgtcgcaccctattacaatctgtttatacatggaatcaatttgttaa |
4170969 |
T |
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