View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_64 (Length: 268)
Name: NF2696_low_64
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 262
Target Start/End: Original strand, 5695851 - 5696079
Alignment:
| Q |
26 |
cattgcatttcattaaatgaacagatttagcaacaagagctgaagttaaaag-caaaaaatttcaatatgaaccctcttggttgagtaaaggaaaatttt |
124 |
Q |
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| T |
5695851 |
cattgcatttcattaaatgaacagatttagcaaccagatctgaagttaaaaggcaaaatatttcaatatgaaccctcttggttgagtaaaagaaaatttt |
5695950 |
T |
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| Q |
125 |
caccacaattgatatgaatttcgtgcataaaagttggaagaaaacttaactgcatattgaatgacaaaatttcatgccttctacattatatcattatata |
224 |
Q |
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| T |
5695951 |
caccacaattgatatgattttcgtgcataaaagttggaagaaaacttaactgaatatt------taaaatttcatac---ctaccttatatcattatata |
5696041 |
T |
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| Q |
225 |
agtttactatctttgagattgatttgttcttcatctca |
262 |
Q |
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| T |
5696042 |
agtttattatctttgagattggtttgttctttatctca |
5696079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 262
Target Start/End: Original strand, 5794396 - 5794560
Alignment:
| Q |
87 |
tcaatatgaaccctcttggttgagtaaaggaaaattttcaccacaattgatatgaatttcgtgcataaaagttggaagaaaacttaactgcatattgaat |
186 |
Q |
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| T |
5794396 |
tcaatatgaaccctcatgcttgagaggaggaaaattttcaccacaattgatatgattttcgtgcataaaagttggaagaaaacctaactgcatattgaat |
5794495 |
T |
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| Q |
187 |
gacaaaatttcatgccttctacattatatcattatataagtttactatctttgagattgatttgttcttcatctca |
262 |
Q |
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| T |
5794496 |
gacaaaatttcatacct-----------accttatataagttaactatctttgagatagatttgttctttatctca |
5794560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 9419246 - 9419101
Alignment:
| Q |
117 |
aaaattttcaccacaattgatatgaatttcgtgcataaaagttggaagaaaacttaactgcatattgaatgacaaaatttcatgccttctacattatatc |
216 |
Q |
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| T |
9419246 |
aaaattctcaccacatttgatatgatttttgtgcataaaatttggaagaaaaattaactacatagtgaataataaaattccataccgtctatcttatatc |
9419147 |
T |
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| Q |
217 |
attatataagtttactatctttgagattgatttgttcttcatctca |
262 |
Q |
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| T |
9419146 |
cttatataattttactatctttgagatggatttgttttttatctca |
9419101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 9430335 - 9430244
Alignment:
| Q |
171 |
taactgcatattgaatgacaaaatttcatgccttctacattatatcattatataagtttactatctttgagattgatttgttcttcatctca |
262 |
Q |
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| T |
9430335 |
taactacatagtgaatgacaaaattccataccttctaccttatatccttatataattttactatctttgagatggatttgttctttatctca |
9430244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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