View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_low_66 (Length: 267)
Name: NF2696_low_66
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_66 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 54879249 - 54879454
Alignment:
| Q |
48 |
tgtttatgttccctcagattatgtgtacaatacaagtgtacatttgatgctttgagcttgttgtatcagaaattgtcgaatggttcaatannnnnnnctg |
147 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54879249 |
tgtttatgttccttcagattatgtgtacaac-----tgtgcatttgatgctttgagcttgttgtatcagaaattgtcgaatggttcaatatttttttctg |
54879343 |
T |
|
| Q |
148 |
ttagtgtagagatgattgatggataattttgttcccattgaatgatgcaatttcactaattattggttattatgtgcatgtaccattttgatgttgtgtt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54879344 |
ttagtgtagagatgattgatggataattttgttcccattgaatgatgcaatttcactaattattggttattatgtgcatgtaccattttgatgttgtgtt |
54879443 |
T |
|
| Q |
248 |
ttttccctttg |
258 |
Q |
| |
|
||||||||||| |
|
|
| T |
54879444 |
ttttccctttg |
54879454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 54879039 - 54879233
Alignment:
| Q |
19 |
gttttattgtatttgagcatgtttatttatgtttatgttccctcagattatgtgtacaatacaagtgtacatttgatgctttgagcttgttgtatcagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54879039 |
gttttattgtatttgagcatgtttatttatgtttatgttccctcagattatgtgtacaatacaagtgtacatttgatgctttgagcttgttgtatcagaa |
54879138 |
T |
|
| Q |
119 |
attgtcgaatggttcaatannnnnnnctgttagtgtagagatgattgatggataattttgttcccattgaatgatgcaatttcactaattattggttatt |
218 |
Q |
| |
|
| ||| ||||| | |||| || |||| || || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54879139 |
aatgtagaatgatgcaattattttttctcttaggatactga----tgatggataa-tttgttccaattgaatgatgcaatttcactaattattggttatt |
54879233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 54892031 - 54892070
Alignment:
| Q |
162 |
attgatggataattttgttcccattgaatgatgcaatttcac |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54892031 |
attgatggataatt--gttcccattgaatgatgcaatttcac |
54892070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 54891934 - 54891967
Alignment:
| Q |
44 |
tttatgtttatgttccctcagattatgtgtacaa |
77 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
54891934 |
tttatgtttatgtttcctcagattatgtgtacaa |
54891967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University