View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_7 (Length: 594)
Name: NF2696_low_7
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 191 - 483
Target Start/End: Complemental strand, 11227252 - 11226960
Alignment:
| Q |
191 |
atgtctctaggcttcatatgacttacacaagaccaaccttcttcaaatggatcatcaacataatataccattctagcatcagttgcaaggatgaatgatt |
290 |
Q |
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| T |
11227252 |
atgtctctaggcttcatatgacttacacaagaccaaccttcttcaaatggatcatcaacataatataccattctagcatcagttgcaaggatgaatggtt |
11227153 |
T |
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| Q |
291 |
catctacttcattcacaccagtgtgtatcaagcgagagaaattcacacttggtattccaaattgatcaatcttaattcccttgttaggtctagcatctac |
390 |
Q |
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| T |
11227152 |
catctacttcattcacaccagtgtgtatcaagctagagaaattcacacttggtattccaaattgatcaatcttaattcccttgttaggtctagtatctac |
11227053 |
T |
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| Q |
391 |
ccaaatacacttgaaaagcacaaccctcagcttaccatagtaatcaagttctatgatgtcaaccaatttcccataatacatctcatcacttga |
483 |
Q |
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| T |
11227052 |
ccaaacacacttgaaaagcacaaccctcagcttaccatagtaatcaagttctatgatgtcaaccaatttcccataatacatctcatcacttga |
11226960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11227381 - 11227252
Alignment:
| Q |
1 |
atattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgacatttggctcttgttcattgtcatcttcttgcagtaattgcaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11227381 |
atattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgatatttggctcttgttcattgtcatcttcttgcagtaattgcaagtct |
11227282 |
T |
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| Q |
101 |
tctatgttctccacagtttgctcacaaaaa |
130 |
Q |
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| T |
11227281 |
tctatgttctccacagtttgctcacaaaaa |
11227252 |
T |
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