View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_low_70 (Length: 256)

Name: NF2696_low_70
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_low_70
NF2696_low_70
[»] scaffold0317 (1 HSPs)
scaffold0317 (66-256)||(19782-19964)
[»] chr6 (1 HSPs)
chr6 (66-228)||(34355284-34355446)
[»] scaffold0016 (2 HSPs)
scaffold0016 (66-159)||(91118-91211)
scaffold0016 (66-159)||(91491-91583)
[»] scaffold0161 (2 HSPs)
scaffold0161 (112-191)||(27053-27132)
scaffold0161 (107-164)||(7986-8043)
[»] chr2 (1 HSPs)
chr2 (98-194)||(17909576-17909672)
[»] chr3 (3 HSPs)
chr3 (209-254)||(30694347-30694392)
chr3 (112-191)||(45730548-45730627)
chr3 (209-254)||(45730308-45730353)
[»] chr1 (2 HSPs)
chr1 (98-194)||(39394664-39394760)
chr1 (204-256)||(10484808-10484860)
[»] chr4 (1 HSPs)
chr4 (212-254)||(19878888-19878930)


Alignment Details
Target: scaffold0317 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 66 - 256
Target Start/End: Complemental strand, 19964 - 19782
Alignment:
Q  66 ctttctatcaccacataccagtttcgtattattttcttggtgcaaccttttgtatattatttccttttgattacgatcttctctatgatttatcatttta 165  Q
    ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| ||||||| ||||||||||||||    
T  19964 ctttctaccagcacataccagtttcgtattattttcttggtgcaaacttttgtatattat--------gattacgatgttctctacgatttatcatttta 19873  T
Q  166 attgtgtagatatccaactttgattacttctactgaacgatagttatatatgaaactctacaatacctgtgcatcgcacgggttagagttt 256  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  19872 attgtgttgatatccacctttgattacttctactgaacgatagttatatatgaaactctacaaaacctgtgcatcgcacgtgttagagttt 19782  T

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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 34355446 - 34355284
Alignment:
Q  66 ctttctatcaccacataccagtttcgtattattttcttggtgcaaccttttgtatattatttccttttgattacgatcttctctatgatttatcatttta 165  Q
    |||||| ||| |||||| || ||| |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  34355446 ctttctgtcatcacatatcaattttgtattattttcttggtgcaaacttttgtatattattttcttttgattacaatgttctctatgatttatcatttta 34355347  T
Q  166 attgtgtagatatccaactttgattacttctactgaacgatagttatatatgaaactctacaa 228  Q
    ||||| | |||||||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  34355346 attgtattgatatccacctttgattacttccgttgaacgatagttatatatgaaactctacaa 34355284  T

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Target: scaffold0016 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 91211 - 91118
Alignment:
Q  66 ctttctatcaccacataccagtttcgtattattttcttggtgcaaccttttgtatattatttccttttgattacgatcttctctatgatttatc 159  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  91211 ctttctgtcaccacatgccagtttcgtattattttcttggtgcaaacttttgtatattatttccttttgattatgatgttctctatgatttatc 91118  T

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Target: scaffold0016; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 91491 - 91583
Alignment:
Q  66 ctttctatcaccacataccagtttcgtattattttcttggtgcaaccttttgtatattatttccttttgattacgatcttctctatgatttatc 159  Q
    |||||| ||||||||||||| |||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  91491 ctttctgtcaccacataccattttcgtattattttttta-tgcaaacttttgtatattatttccttttgattacgatgttctctatgatttatc 91583  T

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Target: scaffold0161 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 27132 - 27053
Alignment:
Q  112 cttttgtatattatttccttttgattacgatcttctctatgatttatcattttaattgtgtagatatccaactttgatta 191  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||||  || |||| |||||||||    
T  27132 cttttgtatattattttcttttgattacaatgttctctatgatttatcatttttattgtgtttatttccacctttgatta 27053  T

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Target: scaffold0161; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 8043 - 7986
Alignment:
Q  107 gcaaccttttgtatattatttccttttgattacgatcttctctatgatttatcatttt 164  Q
    |||| |||||||||||||||| ||||||||||| || |||  ||||||||||||||||    
T  8043 gcaaacttttgtatattattttcttttgattacaatgttccgtatgatttatcatttt 7986  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 17909576 - 17909672
Alignment:
Q  98 tttcttggtgcaaccttttgtatattatttccttttgattacgatcttctctatgatttatcattttaattgtgtagatatccaactttgattactt 194  Q
    ||||||||||||  |||||||||||| |||||||||||| || || ||||||||||||| ||||||| ||||||| ||| | || |||| |||||||    
T  17909576 tttcttggtgcagacttttgtatattttttccttttgataacaatgttctctatgatttgtcatttttattgtgttgattttcacctttcattactt 17909672  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 30694392 - 30694347
Alignment:
Q  209 ttatatatgaaactctacaatacctgtgcatcgcacgggttagagt 254  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  30694392 ttatatatgaaactctacaaaacccgtgcatcgcacgggttagagt 30694347  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 45730627 - 45730548
Alignment:
Q  112 cttttgtatattatttccttttgattacgatcttctctatgatttatcattttaattgtgtagatatccaactttgatta 191  Q
    |||||||||||||||| ||||||||||| |  |||| |||||||| ||||||| |||||||  || |||| |||||||||    
T  45730627 cttttgtatattattttcttttgattacaacgttctttatgatttgtcatttttattgtgttcatttccagctttgatta 45730548  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 45730353 - 45730308
Alignment:
Q  209 ttatatatgaaactctacaatacctgtgcatcgcacgggttagagt 254  Q
    |||||||||||||||||||| ||| | |||||| ||||||||||||    
T  45730353 ttatatatgaaactctacaaaacccgcgcatcgaacgggttagagt 45730308  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 39394664 - 39394760
Alignment:
Q  98 tttcttggtgcaaccttttgtatattatttccttttgattacgatcttctctatgatttatcattttaattgtgtagatatccaactttgattactt 194  Q
    ||||||||||||| ||||||||||||  || |||||||   || | |||| |||||||| ||||||| ||||||| ||| |||| |||| |||||||    
T  39394664 tttcttggtgcaagcttttgtatatttgtttcttttgacatcggtgttctttatgatttgtcatttttattgtgttgatttccatctttcattactt 39394760  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 10484808 - 10484860
Alignment:
Q  204 gatagttatatatgaaactctacaatacctgtgcatcgcacgggttagagttt 256  Q
    |||| |||||||||||||||||||| ||| || ||||| ||||||| ||||||    
T  10484808 gatacttatatatgaaactctacaaaacccgtacatcgtacgggttggagttt 10484860  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 19878888 - 19878930
Alignment:
Q  212 tatatgaaactctacaatacctgtgcatcgcacgggttagagt 254  Q
    ||||||||||||||||| || ||| ||||||||||||||||||    
T  19878888 tatatgaaactctacaaaacttgtacatcgcacgggttagagt 19878930  T

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