View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_low_72 (Length: 254)

Name: NF2696_low_72
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_low_72
NF2696_low_72
[»] chr3 (3 HSPs)
chr3 (24-114)||(53841816-53841906)
chr3 (157-245)||(4706340-4706428)
chr3 (162-226)||(33762039-33762103)
[»] chr4 (3 HSPs)
chr4 (157-237)||(26393303-26393383)
chr4 (157-225)||(21526942-21527010)
chr4 (157-225)||(36254120-36254188)
[»] chr7 (1 HSPs)
chr7 (157-237)||(1512465-1512545)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 53841906 - 53841816
Alignment:
Q  24 tattaaaagttaaaatcatcatacttatctctaaaaatatatttgtttaggaatttgtaggtcatacattttgctacgatgttgaaaagta 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53841906 tattaaaagttaaaatcatcatacttacctctaaaaatatatttgtttaggaatttgtaggtcatacattttgctatgatgttgaaaagta 53841816  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 4706340 - 4706428
Alignment:
Q  157 agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcactttctctgc 245  Q
    |||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  4706340 agataaaaaaagggtacatgatatctttagtgacaaaccactgaattatgctttttctctccccctttacaatcagtcactctctctgc 4706428  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 33762039 - 33762103
Alignment:
Q  162 aaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttac 226  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33762039 aaaaaagggtacatgatatctttaatgacaaaccactggattatgctttttctctccccctttac 33762103  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 26393383 - 26393303
Alignment:
Q  157 agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcact 237  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26393383 agataaaaaaagggtacatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaaccaatcact 26393303  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 21527010 - 21526942
Alignment:
Q  157 agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctcccccttta 225  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21527010 agataaaaaaagggtacatgatatctttagtgacaaaccactggattatgctttttctctcccccttta 21526942  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 36254188 - 36254120
Alignment:
Q  157 agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctcccccttta 225  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36254188 agataaaaaaagggtacatgatatctttagtgacaaaccactggattatgctttttctctcccccttta 36254120  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 1512545 - 1512465
Alignment:
Q  157 agattaaaaaaggatatatgatatctttagtgacaaaccactggattatgctttttctctccccctttacaatcagtcact 237  Q
    |||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  1512545 agataaaaaaaggatacataatatctttaatgacaaaccactggattatgctttttctctccccctttacagccagtcact 1512465  T

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