View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_low_77 (Length: 238)

Name: NF2696_low_77
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_low_77
NF2696_low_77
[»] chr6 (2 HSPs)
chr6 (1-228)||(29839973-29840200)
chr6 (170-228)||(29831484-29831542)
[»] chr7 (1 HSPs)
chr7 (76-159)||(8087005-8087088)
[»] chr1 (4 HSPs)
chr1 (87-162)||(49756692-49756767)
chr1 (181-228)||(34624966-34625013)
chr1 (76-179)||(21623594-21623696)
chr1 (83-178)||(25629796-25629891)
[»] chr4 (2 HSPs)
chr4 (76-162)||(17038381-17038467)
chr4 (78-159)||(25396012-25396093)
[»] scaffold0004 (1 HSPs)
scaffold0004 (80-162)||(234356-234438)
[»] chr5 (1 HSPs)
chr5 (107-180)||(33239345-33239418)
[»] chr3 (1 HSPs)
chr3 (76-181)||(44873891-44873998)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 29839973 - 29840200
Alignment:
Q  1 attaatcataccaagaaaacttattaaattttattacttttgatagaacggtttgtattttttctataacattagccttaactatttattatctcattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29839973 attaatcataccaagaaaacttattaaattttattacttttgatagaacggtttgtattttttctataacattagccttaactatttattatctcattcc 29840072  T
Q  101 acctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactttaaaaacgatttaccaggctgtggcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29840073 acctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactttaaaaacgatttaccaggctgtggcat 29840172  T
Q  201 attattatcatggtttgattcttgatga 228  Q
    ||||||||||||||||||||||||||||    
T  29840173 attattatcatggtttgattcttgatga 29840200  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 29831542 - 29831484
Alignment:
Q  170 actttaaaaacgatttaccaggctgtggcatattattatcatggtttgattcttgatga 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29831542 actttaaaaacgatttaccaggctgtggcatattattatcatggtttgattcttgatga 29831484  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 8087088 - 8087005
Alignment:
Q  76 ccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaat 159  Q
    |||| ||||||||||| ||||||||| ||| |||| |||||||||||| || || ||| |||||||||||||||| || |||||    
T  8087088 ccttgactatttattaactcattccatctatttctctctttgcaataaatagttaaggatattattgacaaaacattagttaat 8087005  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 49756767 - 49756692
Alignment:
Q  87 tattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgtt 162  Q
    |||||||||||| ||| || |||||||| |||||||| ||||| ||||||| ||||||||||||||| ||| ||||    
T  49756767 tattatctcattacacatatttctatctctgcaataaatacttaagggtataattgacaaaacaataattattgtt 49756692  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 34625013 - 34624966
Alignment:
Q  181 gatttaccaggctgtggcatattattatcatggtttgattcttgatga 228  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||    
T  34625013 gatttatcaggctacggcatattattatcatggtttgattcttgatga 34624966  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 21623696 - 21623594
Alignment:
Q  76 ccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaacttta 175  Q
    |||||| |||||||||||| ||| ||| || |||| |||||||||||| ||||| ||  ||||||| ||||||||||| | |||||| || | ||||||     
T  21623696 ccttaaatatttattatctaatttcacttatttctctctttgcaataaatactt-agactattattaacaaaacaatagtcaatgtttcgctaaactttg 21623598  T
Q  176 aaaa 179  Q
    ||||    
T  21623597 aaaa 21623594  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 25629796 - 25629891
Alignment:
Q  83 tatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactttaaaa 178  Q
    |||||||||||| |||| || || |||| | |||||||||| || || ||||| ||||| ||| ||||||| |||||||||  || ||||||||||    
T  25629796 tatttattatcttattcaacttatttctctatttgcaataaatagttaagggtgttattcacacaacaataattaatgttataatcaactttaaaa 25629891  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 17038467 - 17038381
Alignment:
Q  76 ccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgtt 162  Q
    |||| ||||| |||||||||||| |||||| |||| | |||||||||| ||||| | ||||||||||| || |||||| ||||||||    
T  17038467 ccttgactatatattatctcattgcacctatttctctttttgcaataaatacttaatggtattattgataagacaataattaatgtt 17038381  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 25396012 - 25396093
Alignment:
Q  78 ttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaat 159  Q
    ||||||| |||||||||||||| |||||  | | ||| ||| |||| |||||||| ||||||| |||||||||||| |||||    
T  25396012 ttaactacttattatctcattctacctatctatctctctgcgataaatacttgagagtattatcgacaaaacaatagttaat 25396093  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 234438 - 234356
Alignment:
Q  80 aactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgtt 162  Q
    |||||||||| |||| |||||| ||| | || |||||| ||||| || || || ||||||||||||||||| || ||||||||    
T  234438 aactatttataatctaattccatctattcctctctttgtaataaatatttaagagtattattgacaaaacagtaattaatgtt 234356  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 33239418 - 33239345
Alignment:
Q  107 ttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactttaaaaac 180  Q
    |||| |||||||||||| ||||| | ||| ||||||||||||||| | |||||||| |  |||||||| |||||    
T  33239418 ttctctctttgcaataaatacttaaaggtgttattgacaaaacaaaaattaatgttgcattgaactttgaaaac 33239345  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 44873891 - 44873998
Alignment:
Q  76 ccttaactatttatta--tctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactt 173  Q
    ||||||||||||||||  |||||||| ||||| |||| ||| |||| ||| || || ||||| |||||||  |||||||| |||||||  |  ||| |||    
T  44873891 ccttaactatttattacatctcattctacctatttctctctctgcagtaaataattaagggtgttattgattaaacaatagttaatgtcccattgacctt 44873990  T
Q  174 taaaaacg 181  Q
    ||||||||    
T  44873991 taaaaacg 44873998  T

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