View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_low_82 (Length: 232)

Name: NF2696_low_82
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_low_82
NF2696_low_82
[»] chr8 (2 HSPs)
chr8 (171-213)||(11325758-11325800)
chr8 (171-213)||(12620142-12620184)
[»] chr2 (3 HSPs)
chr2 (83-146)||(35917531-35917593)
chr2 (171-213)||(35917615-35917657)
chr2 (83-139)||(9795712-9795768)
[»] chr3 (1 HSPs)
chr3 (45-79)||(30694341-30694375)
[»] chr1 (1 HSPs)
chr1 (176-213)||(7714012-7714049)


Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 11325800 - 11325758
Alignment:
Q  171 tacaccaatttaagctattaactttattttcttaccaaataat 213  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  11325800 tacaccaatttaaactattaactttattttcttaccaaataat 11325758  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 12620184 - 12620142
Alignment:
Q  171 tacaccaatttaagctattaactttattttcttaccaaataat 213  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  12620184 tacaccaatttaagctattgactttatttttttaccaaataat 12620142  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 35917531 - 35917593
Alignment:
Q  83 aatttcgtaaataaatatcatattaattatacattcaatactatgctatgaaacgactgcaaaa 146  Q
    ||||||||| |||||||||||||| |||||||||||||| || |||||| ||| ||||||||||    
T  35917531 aatttcgtatataaatatcatattgattatacattcaatgctttgctat-aaatgactgcaaaa 35917593  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 35917615 - 35917657
Alignment:
Q  171 tacaccaatttaagctattaactttattttcttaccaaataat 213  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  35917615 tacaccaatttaaactattaattttattttcttaccaaataat 35917657  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 9795768 - 9795712
Alignment:
Q  83 aatttcgtaaataaatatcatattaattatacattcaatactatgctatgaaacgac 139  Q
    |||||||||  ||||||  ||||| |||||||||||||||||||| |||||||||||    
T  9795768 aatttcgtatgtaaatagtatattgattatacattcaatactatgttatgaaacgac 9795712  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 30694341 - 30694375
Alignment:
Q  45 aactaaactctaacccgtgcgatgcacgggttttg 79  Q
    ||||| |||||||||||||||||||||||||||||    
T  30694341 aactagactctaacccgtgcgatgcacgggttttg 30694375  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 7714049 - 7714012
Alignment:
Q  176 caatttaagctattaactttattttcttaccaaataat 213  Q
    |||||||||||||||||||||||||||||  |||||||    
T  7714049 caatttaagctattaactttattttcttattaaataat 7714012  T

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