View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_85 (Length: 222)
Name: NF2696_low_85
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_85 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42780675 - 42780454
Alignment:
| Q |
1 |
aagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgcaaggtgaggcagaatcaagtttggaga |
100 |
Q |
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| T |
42780675 |
aagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgcaaggtgaggcagaatcaagtttggaga |
42780576 |
T |
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| Q |
101 |
gacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggattgac |
200 |
Q |
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| T |
42780575 |
gacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggattgac |
42780476 |
T |
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| Q |
201 |
cagtgtgactaaaaacttcttc |
222 |
Q |
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| T |
42780475 |
cggtgtgactaaaaacttcttc |
42780454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29539167 - 29539388
Alignment:
| Q |
1 |
aagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgcaaggtgaggcagaatcaagtttggaga |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
29539167 |
aagtggacatatgcatatggatactatttagatgagcatgagcttgctaaaaagaagctctttgagtacttgcaaggtgaggcagaatcaggcttggaga |
29539266 |
T |
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| Q |
101 |
gacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggattgac |
200 |
Q |
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| T |
29539267 |
gacttcatctatgtgccgaaaaggaactccaagtattcctcagtgctgaaggcccctctaaagaattcaacgattttcgctcaaaactagctggattgac |
29539366 |
T |
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| Q |
201 |
cagtgtgactaaaaacttcttc |
222 |
Q |
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| T |
29539367 |
ccgtgtgactaaaaacttcttc |
29539388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29554012 - 29554232
Alignment:
| Q |
1 |
aagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgcaaggtgaggcagaatcaagtttggaga |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
29554012 |
aagtggacatatgcatatggatactatttagctgagcatgagcatgctaaaaagcagctctttgagtacttgcaaggtgtggcagaatcaggtttggaga |
29554111 |
T |
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| Q |
101 |
gacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggattgac |
200 |
Q |
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| T |
29554112 |
gacttcatcaatgcgccgaaaaggaactccaagcattcctcagtgctgaagccccgtctgaaggattcaacaattttcgcagaaaactggctggattgac |
29554211 |
T |
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| Q |
201 |
cagtgtgactaaaaacttctt |
221 |
Q |
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| T |
29554212 |
cagtgtgactaaaaacttctt |
29554232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 42194087 - 42194211
Alignment:
| Q |
79 |
gaggcagaatcaagtttggagagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttc |
178 |
Q |
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| T |
42194087 |
gaggcagaatcaggtttggagagacttcatcaatgcgccgaaaaggaactccaagtattcctcagtgctgaaggcccgtctaaagaattcaacgattttc |
42194186 |
T |
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| Q |
179 |
gctcaaaactagctggattgaccag |
203 |
Q |
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| T |
42194187 |
gcaccaaactagctggattgaccag |
42194211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42193908 - 42193985
Alignment:
| Q |
1 |
aagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgcaaggt |
78 |
Q |
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| T |
42193908 |
aagtggacatatgcatatggatactatttagccgagcatgagcatgctaaaaagcagttctttgagtacttgcaaggt |
42193985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 25211746 - 25211820
Alignment:
| Q |
4 |
tggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgcaaggt |
78 |
Q |
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| T |
25211746 |
tggacgtatgcatatggttactatttacctgagcatgagggtgcaaaaaaacagttctttgagtatttgcaaggt |
25211820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 25211907 - 25212027
Alignment:
| Q |
75 |
aggtgaggcagaatcaagtttggagagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgat |
174 |
Q |
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|||||| |||||||| || | ||||||||||||||||| || ||||| ||||| || |||||||| | |||||| || ||||||||||||||||| |
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| T |
25211907 |
aggtgaagcagaatctggtctagagagacttcatcaatgtgctgaaaaagaactacagcaattcctcactgctgaaggccaatctaaagaattcaacgac |
25212006 |
T |
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| Q |
175 |
tttcgctcaaaactagctgga |
195 |
Q |
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| T |
25212007 |
ttccgtacaaaattagctgga |
25212027 |
T |
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