View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_86 (Length: 220)
Name: NF2696_low_86
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 53842369 - 53842272
Alignment:
| Q |
19 |
atttcaccctcaactgttgccggagaatgagtcttccgttcgtgttctcacggcgcagaactcgcctaacggaattcaggtataaatgactatttccc |
116 |
Q |
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| T |
53842369 |
atttcaccctcaaccgttgcaggagaatgagtcttccgttcgtgttctcacggcgcagaactcgcctaacggaattcaggtataaatgactatttccc |
53842272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 53844072 - 53843992
Alignment:
| Q |
19 |
atttcaccctcaactgttgccggagaatgagtcttccgttcgtgttctcacggcgcagaactcgcctaacggaattcaggt |
99 |
Q |
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| T |
53844072 |
atttcgccctcaatagttccaggagaatgagtcttttgttcgtgttctcacggcgcacaagttgcctaacggaatccaggt |
53843992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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