View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_low_9 (Length: 572)
Name: NF2696_low_9
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_low_9 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 284 - 562
Target Start/End: Complemental strand, 13642519 - 13642243
Alignment:
| Q |
284 |
tatgtaattatttttcacatcgaaataggctccatcttcatacccaatctagaatattatgattcaattttttcagaaattgaacaagaagagtattaat |
383 |
Q |
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| T |
13642519 |
tatgtaattatttttcacatcgaaataggctccatcttcatacccaatctagaatattatgattctattttttcagaaattgaacaaga---gtattaat |
13642423 |
T |
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| Q |
384 |
cgacccaaaggtaagttaacatgactaaatatcacatgaaaatcaaccattgaaaatttagggttctgttattctatattgtaaattttcaattctatta |
483 |
Q |
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| T |
13642422 |
cgacccaaaggtaaattaacatgactaaatatcacatgaaaatcaaccattgaaaatttagggttctgttattttatattgtaaattttcaattctatta |
13642323 |
T |
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| Q |
484 |
aacatcac-taaccatttagcaacaaataatttcaattcaagtgtgaattttatttgacaatggttcttattgacctatg |
562 |
Q |
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| T |
13642322 |
aacatcacttaaccatttagcaacaaataatttcaattgaagtgtgaattttatttgacaatggttgttattgacctatg |
13642243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 13642820 - 13642606
Alignment:
| Q |
47 |
atgttttcaagccataaaattgtaaaccatcaagaattgttaaaaagtttgtcaactataaaattgctactcaattgctcaccgaaaacacagataatga |
146 |
Q |
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| T |
13642820 |
atgttttcaagccataaaattgtaaaccatcaagaattgttaaaaagtttgtcaactataaaattgctactcaattgctcaccgaaaacacagataatga |
13642721 |
T |
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| Q |
147 |
tcgtcttaattgagacaatttgggtagcggtgcaaaaactgtaaatcataaaatagtttcttataatgtttacttgggtcatcctttacctcgtttaatt |
246 |
Q |
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| T |
13642720 |
tcgtcttaattgagacaatttgggtagcaatgcaaaaattgtaaatcataaaatagtttcttataatgtttacttgggtcatcctttacctcgtttaatt |
13642621 |
T |
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| Q |
247 |
ggattatattcaatt |
261 |
Q |
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| T |
13642620 |
ggattatattcaatt |
13642606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13643272 - 13643229
Alignment:
| Q |
1 |
tgatctgttgtggacaatggtccattttagcaaacatcataatt |
44 |
Q |
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| T |
13643272 |
tgatatgttgtggacaatggttcattttagcaaacatcataatt |
13643229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 296 - 474
Target Start/End: Original strand, 55667 - 55846
Alignment:
| Q |
296 |
tttcacatcgaaataggctccatcttcatacccaa-tctagaatattatgattcaattttttcagaaattgaacaagaagagtattaatcgacccaaagg |
394 |
Q |
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| T |
55667 |
tttcacatcttaataggctccatctccatccccaaatctagaatattattattca-ttttttcacaaatggaataagaagaaaatcaatcaacccaaagc |
55765 |
T |
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| Q |
395 |
taagttaacatgactaaatatcacatgaaaatcaaccattgaaaattt-agggttctgttattctatattgtaaattttca |
474 |
Q |
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| T |
55766 |
taaattgtcatgaccaaattccacatgaaaatcaacgattgaaaatttgggggttctgttattttatattgtaaattttca |
55846 |
T |
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