View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_1 (Length: 753)
Name: NF2697_high_1
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 101 - 735
Target Start/End: Complemental strand, 39983258 - 39982624
Alignment:
| Q |
101 |
ttggacatatcaattttttggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatttaaaattattccggtagattcttctattccatt |
200 |
Q |
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| T |
39983258 |
ttggacatatcaatttttgggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatataaaattattccggtagattcttctattccatt |
39983159 |
T |
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| Q |
201 |
ctaggttataatgccggtagcaaagttgagtggttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
300 |
Q |
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| T |
39983158 |
ctaggttataatgccggtagcaaagttgagtagttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
39983059 |
T |
|
| Q |
301 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacatatggaatttcttcattttgaaatcatattaaagtaggc |
400 |
Q |
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| T |
39983058 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacgtatggaatttcttccttttgaaatcatattaaaataggc |
39982959 |
T |
|
| Q |
401 |
attcagataacatgattcatatatatcaaataacatcatgattcatactagcaag-nnnnnnnnnntcaaatttaaatacaaatattagacatataaatt |
499 |
Q |
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| T |
39982958 |
attcagataacatgattc----atatcaaataacatcatgattcatactagcaagaaaaaaaaaaatcaaatttaaatacaaatattagac--ataaatt |
39982865 |
T |
|
| Q |
500 |
taacactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttcttcattagac-------tcaccatgtacaccatgannnn |
592 |
Q |
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| T |
39982864 |
taacactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttcttcattagactcaccagtcaccatgtacaccatgatttt |
39982765 |
T |
|
| Q |
593 |
nnnacaaatttcttagaactagagtgtctagtgtactggaaggggccagtagcttcgtaacatcttaaacatgagtgtcatcctatacaacccgacaaga |
692 |
Q |
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| T |
39982764 |
tttacaaatttcttagaactagagtgtcta--gtactggaaggggccagtagcttcgtaacatcttaaacatgagtgtcatcctatacaacccgacaaga |
39982667 |
T |
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| Q |
693 |
tgccaagtctctaatacgcccgatcgtgggatcaagtatgttg |
735 |
Q |
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| T |
39982666 |
tgccaagtctctaatacgcccgatcgtgggatcaagtatgttg |
39982624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 502 - 735
Target Start/End: Original strand, 40416147 - 40416410
Alignment:
| Q |
502 |
acactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttcttcattagactc-accatgtacaccatg------------a |
588 |
Q |
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| T |
40416147 |
acactaaaagttcatgaatgagctaagctggtaaaactcttgcaagatgacatgcttttttcattagactcaaccatgtacaccatgattttttttttca |
40416246 |
T |
|
| Q |
589 |
nnnnnnnacaaatttcttagaactagagtgtctagtgtactggaaggggccagtagcttc----------------gtaacatcttaaa---catgagtg |
669 |
Q |
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| || |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
40416247 |
atttcttagaactttcttagaattagagtgtcta--gtactggaaggggccagtagcttccttgaggatctacttcgtaacatcttaaacagcatgagtg |
40416344 |
T |
|
| Q |
670 |
tcatcctatacaacccgacaagatgccaagtctctaatacgcccgatcgtgggatcaagtatgttg |
735 |
Q |
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| T |
40416345 |
tcatcctatacaacccgacaagatgccaagtctctaatacgcccgatcgtgggatcaagtatgttg |
40416410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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