View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_17 (Length: 401)
Name: NF2697_high_17
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 41795295 - 41795663
Alignment:
| Q |
12 |
atgaacaaatatgtgagattatgttgagattggtggtataaattaatgaaatatagttacataatnnnnnnnnnnnnnntagatgttat----ctcattc |
107 |
Q |
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| T |
41795295 |
atgaacaaatatgtgagattatgttgagattggtggtataaattaatgaaatatagttacataataaaaaaaa------tagatgttatatatctcattc |
41795388 |
T |
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| Q |
108 |
caatttcattcaaattcatcctaccttatgcaaacaatccaaagataattagttacctcttcttgaagtttctgtttttccttggagacaacatcaaatt |
207 |
Q |
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| T |
41795389 |
caatttcattcaaattcatcctaccttatgcaaacaatccaaagataattagttacctcttcttgaagtttctgtttttccttggagacaacatcaaatt |
41795488 |
T |
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| Q |
208 |
cttgtttcaaaacatcatacaagtgttcaagctgcttagccttccaccttgtacgcctattttggaaccaaacagcaatttggcgaggttggagccctag |
307 |
Q |
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| T |
41795489 |
cttgtttcaaaacatcatacaagtgttcaagctgcttagccttccaccttgtacgcctattttggaaccaaacagcaatttggcgaggttggagccctag |
41795588 |
T |
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| Q |
308 |
ctctcttgaaagcttcatcttcctttcagggtctagctttatttcttcttggaaactcttctccagtgaatcaat |
382 |
Q |
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| T |
41795589 |
ctctcttgaaagcttcatcttcctttcagggtctagctttatttcttcttggaaactcttctccagtgaatcaat |
41795663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 221 - 376
Target Start/End: Complemental strand, 26932332 - 26932177
Alignment:
| Q |
221 |
atcatacaagtgttcaagctgcttagccttccaccttgtacgcctattttggaaccaaacagcaatttggcgaggttggagccctagctctcttgaaagc |
320 |
Q |
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| T |
26932332 |
atcatataagtgttcaagttgcttggtcttccacctagcacgtctattttggaaccaaatagcaatttgacgaggctgtagccctaactccttggaaagc |
26932233 |
T |
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| Q |
321 |
ttcatcttcctttcagggtctagctttatttcttcttggaaactcttctccagtga |
376 |
Q |
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| T |
26932232 |
ttcatcttcctttgagggtctagtttgatctcctcttgaaaactactctccagtga |
26932177 |
T |
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