View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_18 (Length: 397)
Name: NF2697_high_18
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4595672 - 4595454
Alignment:
| Q |
1 |
ccagtaagacaaaagaaaaaattggtgttataacattttatccatttccagctcgtcctctagcaaatgtttcattttgttactcaaattttatttttat |
100 |
Q |
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| T |
4595672 |
ccagtaagacaaaagaaaaaattggtgctataacattttatccatttccatctcgtcctctagcaaatgttccattttgttactcaaattttatttttat |
4595573 |
T |
|
| Q |
101 |
tccactatttccacgagtaaatattnnnnnnnnnnnncggtttacnnnnnnnctctttcacaaaaatgtatttatcacatatacttnnnnnnnnntgtgg |
200 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
4595572 |
tccactatttccacgagtaaatattaaaaaaaaaaaatggtttactttttttctctttcacaaaaatgtatttatcacatatactt-aaaaaaaatgtgg |
4595474 |
T |
|
| Q |
201 |
aacaaactgttggaattgag |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4595473 |
aacaaactgttggaattgag |
4595454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 4595396 - 4595293
Alignment:
| Q |
278 |
cgtaattaatccatatacatgaactatattttattcatatagtatacggatccctatgttttttaatttatacaaatgtctatattttatttagatgttg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4595396 |
cgtaattaatccatatacatgaactatattttattcatatagtatacggatccctatgttttttaatttatacaaatgtctatattttatttagatgttg |
4595297 |
T |
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| Q |
378 |
taac |
381 |
Q |
| |
|
|||| |
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|
| T |
4595296 |
taac |
4595293 |
T |
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