View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_20 (Length: 384)
Name: NF2697_high_20
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 47005948 - 47005588
Alignment:
| Q |
19 |
gtgagtgtgctcatattcattgtcttgtctaaacaggtatagacttaaacataaaagagttaacatcagagcagttaagcattggtgcaggcagattttg |
118 |
Q |
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| T |
47005948 |
gtgagtgtgctcatattcattgtcttgtctaaacaggtatagacttaaacataaaagagttaacatcagagcagttaagcattggtgcaggcagattttg |
47005849 |
T |
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| Q |
119 |
gaaggtcttgtctatctccacagccatgaccctcctgtgatccatagagatctcaagtgtgataatattttcatcaatggtaaccaaggagaagtcaaaa |
218 |
Q |
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| T |
47005848 |
gaaggtcttgtctatctccacagccatgaccctcctgtgatccatagagatctcaagtgtgataatattttcgtcaatggtaaccaaggagaagtcaaaa |
47005749 |
T |
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| Q |
219 |
ttggcgatctcggccttgctgcaattctccgcaaatcgactgttcactgtgttggtgcgtaaagcagaatgaaaggctttagttttaacacaagctatga |
318 |
Q |
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| T |
47005748 |
ttggcgatctcggccttgctgcaattctccgcaaatcgactgttcactgtgttggtgcgtaaagcaaaatgaaaggctttagttttaacacaagctatga |
47005649 |
T |
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| Q |
319 |
atataacatgttaccnnnnnnnncaatttgttatctgccaaatatatcagttcatctcact |
379 |
Q |
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| T |
47005648 |
atataacatgttaccttttttttcaatttgttatctgccaaatatatcagtttatttcact |
47005588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 36199860 - 36200062
Alignment:
| Q |
53 |
aggtatagacttaaacataaaagagttaacatcagagcagttaagcattggtgcaggcagattttggaaggtcttgtctatctccacagccatgaccctc |
152 |
Q |
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| T |
36199860 |
aggtataggctgaagcacaagagagttaacataagagcagtgaagcattggtgcatacagatcctgagaggacttttgtatctacatagccatgacccac |
36199959 |
T |
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| Q |
153 |
ctgtgatccatagagatctcaagtgtgataatattttcatcaatggtaaccaaggagaagtcaaaattggcgatctcggccttgctgcaattctccgcaa |
252 |
Q |
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| T |
36199960 |
cggttatccatagagatctcaaatgtgataacatttttatcaatggaaatcaaggagaagtcaaaattggggatcttggcctagccgcaattcttcgtaa |
36200059 |
T |
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| Q |
253 |
atc |
255 |
Q |
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||| |
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| T |
36200060 |
atc |
36200062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 47354500 - 47354322
Alignment:
| Q |
77 |
gttaacatcagagcagttaagcattggtgcaggcagattttggaaggtcttgtctatctccacagccatgaccctcctgtgatccatagagatctcaagt |
176 |
Q |
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||||| || |||||||| ||||||||||| || ||||| || |||| ||| ||||| || ||||| ||||| |||||||||||||||||||| || | |
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| T |
47354500 |
gttaatattagagcagtgaagcattggtgtagacagatcctgcaaggacttcattatcttcatagccacgacccacctgtgatccatagagatcttaaat |
47354401 |
T |
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| Q |
177 |
gtgataatattttcatcaatggtaaccaaggagaagtcaaaattggcgatctcggccttgctgcaattctccgcaaatc |
255 |
Q |
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| T |
47354400 |
gtgataatattttcattaatggaaatcaaggggaagtgaagattggggatcttggtttggcagcaattctccggaaatc |
47354322 |
T |
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