View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_22 (Length: 371)
Name: NF2697_high_22
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 2950006 - 2949652
Alignment:
| Q |
1 |
caaaatgaatcaccaatgacgtatgatatatcttgagaattaagacatgaagttttttagttaggatgagattaatttatatatccattttggttgctga |
100 |
Q |
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| T |
2950006 |
caaaatgaatcaccaatgacgtatgatatatcttgagaattaagacatgaagttttttagttaggatgagattaatttatatatccattttggttgctga |
2949907 |
T |
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| Q |
101 |
gaaaaaagatctatcaaaagatttttctctacataaaaatgaaggattaggaaaagtatgtatgtgcctcctgttgaaaatttagtatagatattggaaa |
200 |
Q |
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| T |
2949906 |
gaaaaaagatctatcaaaagattttcctctacataaaaatgaaggattaggaaaagtatgtatgtgcctcctgttgaaaatttagtatagatattggaaa |
2949807 |
T |
|
| Q |
201 |
gatttcaagttgaacaaagcattacaaacaagtttaggagttgaagcattcaatgatatccatgagtagatttacttgagatgcctattttggtcagaca |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949806 |
gatttcaagtcgaacaaagcattacaaacaagtttaggagttgaagcattcaatgatatccatgagtagatttacttgagatgcctattttggtcagaca |
2949707 |
T |
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| Q |
301 |
aatacataactcactcatcaaatctaggaaaaatctcctaaaaaactggcatata |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2949706 |
aatacataactcactcatcaaatctaggaaaaatctccttaaaaactggcatata |
2949652 |
T |
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