View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_23 (Length: 362)
Name: NF2697_high_23
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 169 - 347
Target Start/End: Complemental strand, 32476673 - 32476495
Alignment:
| Q |
169 |
aaaacaagatcatcactagaactaaaatttgaggcttaaactaaaagaagaagagagtgtataagagttgaaccaaactgagccagttgctgaagggttg |
268 |
Q |
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| T |
32476673 |
aaaacaagatcatcactagaactaaaatttgaggcttaaactaaaaaaagaagagagtgtataagagttgaaccaaactgagccagttgctgaagggttg |
32476574 |
T |
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| Q |
269 |
cgtttgttcttctccggtgataccaaagaaacaatattctttgatattgttttcttgcatttcttattagtgataaagg |
347 |
Q |
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| T |
32476573 |
cgtttgttcttcaccggtgataccaaagaaacaatattctttgatattgttttcttgcatttcatattagtgataaagg |
32476495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 32477572 - 32477417
Alignment:
| Q |
16 |
ataagcatacaaattaatctcttaacaaagtccttgaaggggttaatcatccgcaacgcaatgaattaaagttcaaattatgaccgaaagaaatgcccgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32477572 |
ataagcatacaaattaatctcttaacaaagtccttgaaggggttaatcattcacaacgcaatgaattaaagttcaaattatgaccgaaagaaatgcccgt |
32477473 |
T |
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| Q |
116 |
ttatacattaaataaaatgttagttaagattaaacggaagttatacttaccctaaa |
171 |
Q |
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| T |
32477472 |
ttatacattaaataaaatgttagttaagactaaacggaagttatacttaccctaaa |
32477417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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