View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_28 (Length: 339)
Name: NF2697_high_28
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_28 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 1644 - 1319
Alignment:
| Q |
1 |
aaagagtggagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttatagattttctagttcattg |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1644 |
aaagagtgaagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttatagattttctagttcattg |
1545 |
T |
|
| Q |
101 |
atggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaagagaattactttaaagagatggaaaaacaaataaacttaa----agacttgtt |
196 |
Q |
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| T |
1544 |
atggatttgaaagagagagaaaaaattggggtttatagcaagtgaaagagaattacttttaagagatggaaaaacaaataaacttaattaaagacttgtt |
1445 |
T |
|
| Q |
197 |
tggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtcacacattttgtacaaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444 |
tggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtcacacattttgtacaaca |
1345 |
T |
|
| Q |
297 |
accacttacgttagacccaactattt |
322 |
Q |
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|||| ||||||||||| ||| ||||| |
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| T |
1344 |
accatttacgttagactcaattattt |
1319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 6612356 - 6612031
Alignment:
| Q |
1 |
aaagagtggagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttatagattttctagttcattg |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6612356 |
aaagagtgaagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttatagattttctagttcattg |
6612257 |
T |
|
| Q |
101 |
atggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaagagaattactttaaagagatggaaaaacaaataaacttaa----agacttgtt |
196 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
6612256 |
atggatttgaaagagagagaaaaaattggggtttatagcaagtgaaagagaattacttttaagagatggaaaaacaaataaacttaattaaagacttgtt |
6612157 |
T |
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| Q |
197 |
tggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtcacacattttgtacaaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6612156 |
tggtacaatataatatcaagaacatcttgctatatattttttagttgaaatcaaactcattatctttccaaatcacaatagtcacacattttgtacaaca |
6612057 |
T |
|
| Q |
297 |
accacttacgttagacccaactattt |
322 |
Q |
| |
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|||| ||||||||||| ||| ||||| |
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| T |
6612056 |
accatttacgttagactcaattattt |
6612031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 6585571 - 6585539
Alignment:
| Q |
176 |
aaataaacttaaagacttgtttggtacaatata |
208 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6585571 |
aaataaacttaaagacttgtttggtacaatata |
6585539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 6660935 - 6660905
Alignment:
| Q |
199 |
gtacaatataatatcaagaacatcttgctat |
229 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6660935 |
gtacaatataatatcaagaacatcttgctat |
6660905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 6741337 - 6741307
Alignment:
| Q |
199 |
gtacaatataatatcaagaacatcttgctat |
229 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6741337 |
gtacaatataatatcaagaacatcttgctat |
6741307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 6582675 - 6582647
Alignment:
| Q |
201 |
acaatataatatcaagaacatcttgctat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6582675 |
acaatataatatcaagaacatcttgctat |
6582647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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