View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2697_high_4 (Length: 560)
Name: NF2697_high_4
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Complemental strand, 45271474 - 45270945
Alignment:
| Q |
20 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
45271474 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgt |
45271375 |
T |
|
| Q |
120 |
gactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45271374 |
gactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaa |
45271275 |
T |
|
| Q |
220 |
ggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgcca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
45271274 |
ggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgcca |
45271175 |
T |
|
| Q |
320 |
aggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtcta |
419 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45271174 |
atgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgtcta |
45271075 |
T |
|
| Q |
420 |
tgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaaccaaaacgcc |
519 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |
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|
| T |
45271074 |
tgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatggccctgcaaagaccattgtcactggtagaaagaaccaaatggcc |
45270975 |
T |
|
| Q |
520 |
ggtaccaatatacagaacagtgcccccttt |
549 |
Q |
| |
|
|||||||| | |||||||| |||| ||||| |
|
|
| T |
45270974 |
ggtaccaacacacagaacactgccaccttt |
45270945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Complemental strand, 45283248 - 45282760
Alignment:
| Q |
20 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
45283248 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgt |
45283149 |
T |
|
| Q |
120 |
gactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45283148 |
gactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaa |
45283049 |
T |
|
| Q |
220 |
ggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgcca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| |
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|
| T |
45283048 |
ggatacccttcatggatctcttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgcca |
45282949 |
T |
|
| Q |
320 |
aggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtcta |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282948 |
aggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtcta |
45282849 |
T |
|
| Q |
420 |
tgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaaga |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
45282848 |
tgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcactggtagaaaga |
45282760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Complemental strand, 45275007 - 45274517
Alignment:
| Q |
20 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
45275007 |
ttgacgatgcaaatgatggtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgt |
45274908 |
T |
|
| Q |
120 |
gactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45274907 |
gactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaa |
45274808 |
T |
|
| Q |
220 |
ggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgcca |
319 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
45274807 |
ggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgcca |
45274708 |
T |
|
| Q |
320 |
aggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtcta |
419 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
45274707 |
atgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtcta |
45274608 |
T |
|
| Q |
420 |
tgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaac |
510 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
45274607 |
tgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaac |
45274517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 45294636 - 45294162
Alignment:
| Q |
20 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgt |
119 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
45294636 |
ttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgt |
45294537 |
T |
|
| Q |
120 |
gactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294536 |
gactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
45294437 |
T |
|
| Q |
220 |
ggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgcca |
319 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| ||||||||||| |
|
|
| T |
45294436 |
ggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgcca |
45294337 |
T |
|
| Q |
320 |
aggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtcta |
419 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
45294336 |
aggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtcta |
45294237 |
T |
|
| Q |
420 |
tgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgt |
494 |
Q |
| |
|
||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
45294236 |
tgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgt |
45294162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 45303596 - 45303122
Alignment:
| Q |
20 |
ttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacattgt |
119 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
45303596 |
ttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgt |
45303497 |
T |
|
| Q |
120 |
gactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303496 |
gactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaa |
45303397 |
T |
|
| Q |
220 |
ggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgcca |
319 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| ||||||||||| |
|
|
| T |
45303396 |
ggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgcca |
45303297 |
T |
|
| Q |
320 |
aggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtcta |
419 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
45303296 |
aggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtcta |
45303197 |
T |
|
| Q |
420 |
tgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgt |
494 |
Q |
| |
|
||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
45303196 |
tgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgt |
45303122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 38588302 - 38588231
Alignment:
| Q |
363 |
ctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcac |
434 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||| || ||||| || ||||||||||| |||||||| |
|
|
| T |
38588302 |
ctcttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcac |
38588231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
383 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
428 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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