View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_40 (Length: 270)
Name: NF2697_high_40
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 34520185 - 34519947
Alignment:
| Q |
15 |
atgaacaaccaaagtatacaaacattttcaacattgatgactcattgatgaacaattgtgttgcattatatattggagcctgctgtttaccctagagagc |
114 |
Q |
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| T |
34520185 |
atgaacaaccaaagtatacaaacattttcaacattgatgactcattgatgaacaattgtgttgcattatatattggagcctgctgtttaccctagagagc |
34520086 |
T |
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| Q |
115 |
caaagcctctcaaagagctgaggaatgccactgagaatcatccttggtaattattcaatctaatgttttgaaattcaaaccgaagatctaatcagtgaga |
214 |
Q |
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| T |
34520085 |
caaagcctctcaaagagctgaggaatgccactgagaatcatccttggtaattattcaatctaatgttttgaaattcaaaccgaagatctaatcagtgaga |
34519986 |
T |
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| Q |
215 |
cctcaagattatgatttaataggttttcaactacagttg |
253 |
Q |
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| T |
34519985 |
cctcaagattatgatttaataggttttcaactacagttg |
34519947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 34532408 - 34532215
Alignment:
| Q |
51 |
atgactcattgatgaacaattgtgttgcattatatattggagcctgctgtttaccctagagagccaaagcctctcaaagagctgaggaatgccactgaga |
150 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |
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| T |
34532408 |
atgactcattgattaacaattgtgttgcagtatatattggatactgctgtttaccctagagagcctgagcctctcaaagagctgaggaaagccagtgaga |
34532309 |
T |
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| Q |
151 |
atcatccttggtaattattcaatct-----aatgttttgaaattcaaaccgaagatctaatcagtgagacctcaagattatgatttaataggtt |
239 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||| |||||| || || ||||| || ||||||||||||||||||||||| |
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| T |
34532308 |
atcatccttggtaattattctatcttctgcaatgttttgaaattcggaccgaatatggaactagtgaaacttcaagattatgatttaataggtt |
34532215 |
T |
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