View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_45 (Length: 250)
Name: NF2697_high_45
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27736384 - 27736145
Alignment:
| Q |
1 |
tcatcaacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaaactattttgatagtactgtgaatcaatg |
100 |
Q |
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| T |
27736384 |
tcatcaacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaaactattttgatagtactgtgaatcaatg |
27736285 |
T |
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| Q |
101 |
gaagttgtatttgctttttggtgagagatatgagaacaaacttcaaatcaagttgccacatccttttgacggaaaccgtggctattatcagaccgtaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27736284 |
gaagttgtatttgctttttggtgagagatatgagaacaaacttcaaatcaagttgccacatccttttgacggaaaccgtggctattatcagaccgtaagt |
27736185 |
T |
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| Q |
201 |
attttaagttccggtattaatggcactctttgcatctgtg |
240 |
Q |
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| T |
27736184 |
attttaagttccggtattaatggcactctttgcatctgtg |
27736145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 27725136 - 27724906
Alignment:
| Q |
1 |
tcatcaacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaaactattttgatagtactgtgaatcaatg |
100 |
Q |
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| T |
27725136 |
tcatcaacatgttttacaaaaatattgtttccaaatatcattcactgtatcatgaagcatgtctccttctaaactattttgagagtactgagaatcaatg |
27725037 |
T |
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| Q |
101 |
gaagttgtatttgctttttggtgagagatatgagaacaaacttcaaatcaagttgccacatccttttgacggaaaccgtggctattatcagaccgtaagt |
200 |
Q |
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| T |
27725036 |
gaagttgtatttgctttccggtgagagatatgagagtaaagttcaaatgaagtggcctcatccttttgacagaaactatggctattatccg------aat |
27724943 |
T |
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| Q |
201 |
attttaagttccggtattaatggcactctttgcatct |
237 |
Q |
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|||||| |||| |||||||||| ||||||||| |||| |
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| T |
27724942 |
attttaggttctggtattaatgacactctttgtatct |
27724906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 27596210 - 27596142
Alignment:
| Q |
6 |
aacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaaac |
74 |
Q |
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|||||||||||||||||||| ||||||||| || ||||| |||| |||||| ||||| |||| |||||| |
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| T |
27596210 |
aacatgttttacaaaaatatggtttccaaatataattcattgtacgatgaaccatgtttcctcctaaac |
27596142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27717792 - 27717718
Alignment:
| Q |
1 |
tcatcaacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaaact |
75 |
Q |
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|||| |||||||||| |||| |||| ||||||||| |||||| ||||||||||||||||||||| ||||||| |
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| T |
27717792 |
tcatgaacatgttttccaaatatatggtttccaaatatcatttgtcgtatgatgaagcatgtctcctcctaaact |
27717718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 27590162 - 27590096
Alignment:
| Q |
6 |
aacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaa |
72 |
Q |
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|||||||||||||| ||||| ||||||||| || ||||| |||| |||||| ||||| |||| |||| |
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| T |
27590162 |
aacatgttttacaataatatggtttccaaatataattcattgtacgatgaaccatgtttcctgctaa |
27590096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 14682762 - 14682555
Alignment:
| Q |
6 |
aacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaagcatgtctccttctaaactattttgatagtactgtgaatcaatggaagt |
105 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
14682762 |
aacatgttttacaaaaatattgttttcaaatatcattcattgtatgacgaagcaagtctccttctaaactatg------------------aatggaagt |
14682681 |
T |
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| Q |
106 |
tgtatttgctttttggtgagagatatgagaacaaacttcaaatcaagttgccacatccttttgacggaaaccgtggctattatcagaccgtaagtatttt |
205 |
Q |
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||||||| |||| ||||||||||| |||||||||| ||||||| |||| |||||||||||||||| ||| ||||||| |||| |||| ||||||| |
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| T |
14682680 |
tgtattttctttctggtgagagatttgagaacaaagttcaaatgaagtggccacatccttttgaccaaaaacgtggctgttat----ccgt--gtatttt |
14682587 |
T |
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| Q |
206 |
aagttccggtattaatggcactctttgcatct |
237 |
Q |
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| |||| |||||||||| ||||||||||||| |
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| T |
14682586 |
aggttcaagtattaatggtactctttgcatct |
14682555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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