View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2697_high_52 (Length: 239)
Name: NF2697_high_52
Description: NF2697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2697_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 36056524 - 36056326
Alignment:
| Q |
1 |
tatactctgcacacacctaatggttggacaagagagtggaaatgatgggtgcaaagatctcacttacatgtatgataaagttagaatatgtgatcaagct |
100 |
Q |
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| T |
36056524 |
tatactctgcacacacctaatggttggaccagagagtggaaaggatgggtgcaaagatcacacttacatgtatgataaagttagaatatgtgatgaagct |
36056425 |
T |
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| Q |
101 |
aactgctctaatttccgcaacttttttgcttatgaggtaagttagttcattagtcatatatcattaactcgtcatcaatcacaaattttttaactattg |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36056424 |
aactgctctaatttccgcaacttttttgctaatgaggtaagttagttcattagtcatatatcattaactcgtgatcaatcacaaattttttaactattg |
36056326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 36054440 - 36054283
Alignment:
| Q |
1 |
tatactctgcacacacctaatggttggacaagagagtggaaatgatgggtgcaaagatctcacttacatgtatgataaagttagaatatgtgatcaagct |
100 |
Q |
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||||||||||||||||| |||| |||||| ||| |||||||| ||||||| |||||||||| || ||||||||||||||||||||| ||| ||||| |
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| T |
36054440 |
tatactctgcacacacccaatgtttggaccagaaagtggaaagaatgggtggaaagatctcaattttatgtatgataaagttagaatacacgatgaagct |
36054341 |
T |
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| Q |
101 |
aactgctctaatttccgcaacttttttgcttatgaggt-aagttagttcattagtcat |
157 |
Q |
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| T |
36054340 |
acctgctctaatttcctccatatttttgctagtgaggtaaagttagttccttagtcat |
36054283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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